PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027064476.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 282aa    MW: 31165.3 Da    PI: 8.0877
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027064476.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.43e-211764249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +i+n+   qvtfskRr+g++KKA+EL++L++ eva+++fs+  k+y +
  XP_027064476.1 17 KIQNEQHLQVTFSKRRAGLFKKASELCTLTGSEVALVVFSPGEKVYSF 64
                    699*******************************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MVPVKKTRGR QKIDIAKIQN EQHLQVTFSK RRAGLFKKAS ELCTLTGSEV ALVVFSPGEK  60
VYSFGSPNID AIIEKFEFST PKSDDASTLL LEAHHRFNVQ HLNKQLSILE NQLEAKKKIG  120
ETLNQLRQVG QIRHWWYAPI NDLNLEQLES LHSALCELQN TVRIELEKPI YENTNQVPDL  180
NGINPSGISP LGINTRENEG GAFDLIQSQP PRTKAFAPTA ASSRVNTGIS SNAWTRALTA  240
ENGPTASLSF APNASEFDGA TMPCYPSQGF NTIYGGLTLF KI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-45M-type_MADS family protein