PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027063960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | HB-other | ||||||||
Protein Properties | Length: 1761aa MW: 197685 Da PI: 5.3015 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.9 | 2e-19 | 53 | 108 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+++ + yps+++r+eLA+klgLt+rq ++WF+ rR k++k XP_027063960.1 53 VKRKMKTPSQLEVLEKAYSVDTYPSEAMRAELAMKLGLTDRQLQMWFCHRRLKDRK 108 58999*************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1761 aa Download sequence |
MFFRKDLILM EKVEVDGGGS GGSAAAAAAD AGAEGGGYDV VKKNSTPEGE PRVKRKMKTP 60 SQLEVLEKAY SVDTYPSEAM RAELAMKLGL TDRQLQMWFC HRRLKDRKPP GEKRVKKEAS 120 PGMVGALSNG VGKELVGGYG GGMKNDQSLG LVRTALGPTE ILQQHRVVHR SGTALARIGT 180 EMPAVKRYYE PPQALSELRA IAFVEAQLGE RLREDGPVLG MEFDPLPPGA FGSPIGLQKP 240 GVGLYEAQVY ETPDAKVIQG AKRTIHEYQF LPEQPSIRDD IRERALPFQY YGSSTDAQSS 300 RTTLSAGRSF MHGTEQLTPG YSFQGEVDIF PQRNSVLNID IDRPGAHLTR GLETPLIPTE 360 KRVIHDEERL ERKRKSEEAR IAREVEAHEK RIRKELEKQD LLRRKRDEQL RKEMERQDKE 420 RRKEEERLLR EKQREEERYQ REQRREMERR EKFLQKESIR AEKMRLKLEM RREREAARLK 480 AATERATARR IAKESVELID DERLELLELA ASSQGLPSTL ALDNEALQNL ESHRDSLTEF 540 PPKTVCLKRP FGMQPWVESE ESVGSILMIW RFLITFADVL GLWPFTLDEI VQAFHDYDSR 600 LLGEIHIALL RIIIRDIEDI ARTPATAVGA NQNAAIPGGG HPQIVEGAYS WGFDILSWHQ 660 HLNPLTWPEI LRQFALAAGF GPKLKRRNVE QSHPHDENEG KDGIDIIAGL RNGAAAENAV 720 AKMRQRGISN LGRSRHRLTP GTVKYAAFHV LSLEGSKGLT ILEAVDKIQN SGLRDLTTSK 780 TPEASVAAAL SRDTKLFERT APSTYCVRAP YRKDPADADA ILATARERIF AYKNEFLDAE 840 EPDEAEKEDA ERDEDSESDM ADDPDINDLD TERNLNKESL HSFEPSTSGV KHHSGNIKEK 900 SHVQFTESSG SSIANTNGSF DIVQPEGMEG ASGSQSAATV GIHIEAANKE DNVIDESSTV 960 ELWVQGLTEG DYSDLSVEER LDALVALIGV ANEGNSIRVV LEERLEAANA LKKQMWAEAQ 1020 LDKRRVKEEY ALKVQSSSFA GSRSEQNSSI TSSDGRQSTF LNIDGRNESL STNPKNHQMD 1080 LGDSSRIPNS SASTTAERNM MLQEFSGPDV LLQQSAYAAE KSRLEMKAYI GQKAEEIYVY 1140 KSVPLGQDRR RNRYWQFIAS PSQNDPGSGR IFVELHDGRW RLIDSAEGFD GLLASLDVRG 1200 TRESHLHSML QRIEVSFRET AKKNLCSRST SQDADDVKEE VYEESPNSMV PDMMEPLASI 1260 RIKCESYGLD KNVTLERYRD FEKWMWDECF SIMKLRALKY GKTLRTRLLS ICSHCHDLYF 1320 FENQHCPFCH KNCSILVGTF NFGEHVSYCK EKQEEVQNRT LVKLEPSSPL RIRLLKAQLA 1380 SLEASLLPEA VKAFWSEDYR RSWGMKLEIA SSAEDLLQIL SLLENAVKRD FLGPDYETAN 1440 ELLGFENLKG GMVDNTPTLE MTAVPPWIPQ TTSAVALRLM DLDTSICYTL QQKDDSEKVK 1500 GARHIIRIPT RNTGATNAAE NVRTERPQEA GTVPEDTWDG PGAKLNSSRR AHRQVARPQR 1560 RVSESRNGSR QGTSAAKRDK FGPLLGWKGR PNGRGGRKRG RRTVRSRQNP TKKRTDIASK 1620 RASAGADIYD KTPSSYQHEW DEEGTTQIQA EVAGNESSSE RSGFDDDNDL MVEDYSGCFG 1680 TKSENLAKVI DYGMGVENGN DELDDDDEED DEEEADERPG EQVVEEYFDS DSEEDANITV 1740 SGEKMGNLNK GSEFSSSDYS D |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.1 | 0.0 | HB-other family protein |