PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027063684.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 28184.8 Da    PI: 9.474
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027063684.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-312978150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  XP_027063684.1 29 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 78
                    79***********************************************8 PP
2K-box105.18.6e-35981935100
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     +  s++ea+a+ +qqe++kL+k i+++q+++Rh+lG++++ L++keL++Le ++ek++ +iR++Knell+++ie + k+e elq++n++Lr+k++
  XP_027063684.1  98 NPGSVSEANAQFYQQEASKLRKHIREIQNSNRHILGDGVDGLNFKELKNLEGKVEKAIGRIRTRKNELLFAEIELMHKREIELQNANTYLRAKIA 192
                     334499***************************************************************************************98 PP

           K-box 100 e 100
                     e
  XP_027063684.1 193 E 193
                     6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MDCPSQDHQF DQSSSSQLRK TGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD  60
AEVALIVFSS RGRLYEYANN SVRGTIERYK KACADSSNPG SVSEANAQFY QQEASKLRKH  120
IREIQNSNRH ILGDGVDGLN FKELKNLEGK VEKAIGRIRT RKNELLFAEI ELMHKREIEL  180
QNANTYLRAK IAENERAQQH MNLMPGSEYQ PLASQPYDVR NFLPVNLLEP DQHYSRQDQT  240
ALQLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-115MIKC_MADS family protein