PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027063672.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 238aa MW: 26993.7 Da PI: 8.306 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.4 | 8.5e-14 | 74 | 121 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 ++ GVr++k g+++AeIrdp + kr++lg+f taeeA +a+ a +++ XP_027063672.1 74 RFVGVRRRK-FGKYAAEIRDPI----KkKRIWLGTFKTAEEASEAYLAKQREF 121 789***999.9*********72....35******************9987765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence |
MTPQSDNLAK KNMTIRKIRV LYSDPAATDS SSDEEQSSHE KKPKRIIHEI LIDQKKMAPS 60 QPKFKWDKKN KEKRFVGVRR RKFGKYAAEI RDPIKKKRIW LGTFKTAEEA SEAYLAKQRE 120 FKALEGFQWE PVDCKQSYLS GSSDEDQLQS SMPTPEALGS PMHTRSESSH DSSSSMSKEN 180 LKVQCLEFDG GCVMGMFVPV PKGPEDYPGS EFFLPILDNQ GFLLGEFSKL DDLSICLG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 98 | RRRKFGKYAAEIRDPIKKKR |
2 | 80 | 99 | RRRKFGKYAAEIRDPIKKKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.1 | 3e-20 | ERF family protein |