PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027063498.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | NAC | ||||||||
Protein Properties | Length: 230aa MW: 25980.6 Da PI: 9.1803 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.1 | 2.2e-33 | 25 | 165 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sg 81 lp+G++F+P+d+e++ e+L++kv+++ ++++ + ++ +i+ ++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ + XP_027063498.1 25 LPAGVKFDPSDQEIL-EHLEAKVRSDVhklhplIDEFIHtLEGEnGICCTHPEKLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKVHtdidgcET 117 799***********9.99******9995554332222222443336**********.555666688******************75545766678 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++v + kg+++g kk+Lv+y gr++k+ekt+Wvmh+y+l XP_027063498.1 118 RWHKTGKTRPVAV-KGKVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 165 8************.999***********66589**************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence |
MMACPSCGLT LQSPEKAGIH DLPGLPAGVK FDPSDQEILE HLEAKVRSDV HKLHPLIDEF 60 IHTLEGENGI CCTHPEKLPG VSKDGLVRHF FHRPSKAYTT GTRKRRKVHT DIDGCETRWH 120 KTGKTRPVAV KGKVKGFKKI LVLYTNYGRQ RKPEKTNWVM HQYHLGNNED EKEGELVVSK 180 VFYQTQPRQC GSLIKDSPVK GNGRIGHEGS HLNNSTFVEY YNSALISFDQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 103 | 133 | RKRRKVHTDIDGCETRWHKTGKTRPVAVKGK |
2 | 104 | 134 | RKRRKVHTDIDGCETRWHKTGKTRPVAVKGK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-110 | NAC family protein |