PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027063311.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 404aa MW: 43735.1 Da PI: 10.0986

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027063311.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.9	9.5e-17	105	195	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ +++Liea + +l+rg+l++++W+ev++++ + ++++r+ +qCk++++ l+k+yk +k+ + + +++st+p+f +l+ XP_027063311.1 105 CWSEDATHTLIEAWGSHYLDLNRGNLRQKHWQEVADAVnadhaHTKKLHRTDIQCKNRIDTLKKKYKLEKAKFLQSNGRVVSTWPFFASLD 195 7**************************************99999*********************99998999*******997 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MSSARRPSPA SASHSPPPPP PLNSTSPSSS STTTTTTSHH SPPMSDEDDA GLPPTSTNTN 60 PTTPPSPSPS PPPPPSSSAD IFPPHPPPRP STTTKATSFP IREDCWSEDA THTLIEAWGS 120 HYLDLNRGNL RQKHWQEVAD AVNADHAHTK KLHRTDIQCK NRIDTLKKKY KLEKAKFLQS 180 NGRVVSTWPF FASLDSLIGD SFIKANAPPS GTPPVTRKNS LAAKNTPSPS PAPASAPATM 240 TVRKEFPVLP PLPSAVPVGP RSKRPAPAQA MGEEAVFRRN FSAMAAAAAA VAEDDEDEEE 300 SDTSSAAAVG LGSGGMRRKK RRGAAGKVAA EGYRKLAEAI RGFADIYERV EEAKQRQMVE 360 LEKQRMQFAK DLEIQRMKLF MESQVQLEKL KRSKRNSQSG DGYL

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MSSARRPSPA SASHSPPPPP PLNSTSPSSS STTTTTTSHH SPPMSDEDDA GLPPTSTNTN  60
PTTPPSPSPS PPPPPSSSAD IFPPHPPPRP STTTKATSFP IREDCWSEDA THTLIEAWGS  120
HYLDLNRGNL RQKHWQEVAD AVNADHAHTK KLHRTDIQCK NRIDTLKKKY KLEKAKFLQS  180
NGRVVSTWPF FASLDSLIGD SFIKANAPPS GTPPVTRKNS LAAKNTPSPS PAPASAPATM  240
TVRKEFPVLP PLPSAVPVGP RSKRPAPAQA MGEEAVFRRN FSAMAAAAAA VAEDDEDEEE  300
SDTSSAAAVG LGSGGMRRKK RRGAAGKVAA EGYRKLAEAI RGFADIYERV EEAKQRQMVE  360
LEKQRMQFAK DLEIQRMKLF MESQVQLEKL KRSKRNSQSG DGYL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	2e-35	Trihelix family protein