PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027063029.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 262aa    MW: 30320.6 Da    PI: 5.0098
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027063029.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l  +v ++G  +W   ++  g+ R++k+c++rw +yl
   XP_027063029.1 14 KGAWSEEEDNKLRAYVLRYGHWNWQQLPKFAGLSRCGKSCRLRWMNYL 61
                     79******************99************************97 PP
2Myb_DNA-binding574.6e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+el+++++k+lG++ W++I ++++ gRt++++k++w+++l
   XP_027063029.1  67 RGSFSEEEEELILKLHKELGNR-WSAITARLP-GRTDNEVKNYWHTHL 112
                      899*******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MVRTTCIDKS GLKKGAWSEE EDNKLRAYVL RYGHWNWQQL PKFAGLSRCG KSCRLRWMNY  60
LRPGVKRGSF SEEEEELILK LHKELGNRWS AITARLPGRT DNEVKNYWHT HLRKRTKQDS  120
KPKDKIEQTS ERSQPMESDA DQNKESSAIS IFHSTTDQNR SGLETEIAAV PAADTNCELS  180
PLSCGSKHFD GGDWFGEDSN SSVESLPESF ESFWSEPFAL DTSYSNLKVI NYDWLPPVEE  240
EFTYPFSSFL DEDMDWFHEL IQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-49MYB family protein