PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027062546.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 650aa MW: 70659.2 Da PI: 7.0441

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027062546.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.9	1.4e-30	375	433	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ XP_027062546.1 375 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGNHNHP 433 7*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 650 aa Download sequence
MAKGSGLSFD PDRIGLFLHK PTVINSLLHH QEDKKGKHHN NYRHLLYYHH HHKLKQEEAP 60 AAFMEMDSAS AVVNKSNNNS RSSPPTTIQF PVNLNCSTHD DDQDDGPLPH NNSDHHQEMD 120 FFADKKLKTD ESKAATIPHP DANTKDLSGP TDLGFNVNTG LHLLTANTSS DQSIVDDGIS 180 PHSDDKRTKS ELAVLQAELE RLNGENLRLR EVLTQVSNNY NNLQMHLMTV MQQQPQQKQD 240 HIKADNIGEG QEGKLPLEDN NNKHQQNSHG LMVPRQFMDL GLAAGATVET DEASLSSSEG 300 RSGRERSRSP TNNVEASTGG SDGRDDSPEK GSQGWGPNKV PRLNNGSKNV DQATEATMRK 360 ARVSVRARSE APMITDGCQW RKYGQKMAKG NPCPRAYYRC TMAAGCPVRK QVQRCAEDRT 420 ILITTYEGNH NHPLPPAAMA MASTTSSAAR MLLSGSMPSA DGLMNSNFLA RTLLPCSSSM 480 ATISASAPFP TVTLDLTQNP NPLQFQRSPN QFHLPFPNAP QNFVGNPVAL LPQIFGQALY 540 NQSKFSGLQM SQDSDAAHLG HQVPQLPPLH QGQQNPLADT VTALTADPNF TAALAAAITT 600 IIGNPQSTHA ANNSSLNITT NTSNNNGSVT TSNNNSNGNN KVLNTSFPGN

Sequence ? help Back to Top

Protein Sequence Length: 650 aa Download sequence

MAKGSGLSFD PDRIGLFLHK PTVINSLLHH QEDKKGKHHN NYRHLLYYHH HHKLKQEEAP  60
AAFMEMDSAS AVVNKSNNNS RSSPPTTIQF PVNLNCSTHD DDQDDGPLPH NNSDHHQEMD  120
FFADKKLKTD ESKAATIPHP DANTKDLSGP TDLGFNVNTG LHLLTANTSS DQSIVDDGIS  180
PHSDDKRTKS ELAVLQAELE RLNGENLRLR EVLTQVSNNY NNLQMHLMTV MQQQPQQKQD  240
HIKADNIGEG QEGKLPLEDN NNKHQQNSHG LMVPRQFMDL GLAAGATVET DEASLSSSEG  300
RSGRERSRSP TNNVEASTGG SDGRDDSPEK GSQGWGPNKV PRLNNGSKNV DQATEATMRK  360
ARVSVRARSE APMITDGCQW RKYGQKMAKG NPCPRAYYRC TMAAGCPVRK QVQRCAEDRT  420
ILITTYEGNH NHPLPPAAMA MASTTSSAAR MLLSGSMPSA DGLMNSNFLA RTLLPCSSSM  480
ATISASAPFP TVTLDLTQNP NPLQFQRSPN QFHLPFPNAP QNFVGNPVAL LPQIFGQALY  540
NQSKFSGLQM SQDSDAAHLG HQVPQLPPLH QGQQNPLADT VTALTADPNF TAALAAAITT  600
IIGNPQSTHA ANNSSLNITT NTSNNNGSVT TSNNNSNGNN KVLNTSFPGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-117	WRKY family protein