PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027062280.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

DBB

Protein Properties

Length: 296aa MW: 32073.8 Da PI: 5.8446

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027062280.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.5	8.7e-06	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC C ++ H H++vpl XP_027062280.1 4 QCNVCEVAEASVLCCADEAALCWACDEKVHAAnklaskHQRVPL 47 7***999*******************66899999999986 PP
2	zf-B_box	30	1.1e-09	52	94	1	37
zf-B_box 1 seerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 s+++kC+ ++e +fC +++ llC++C +++H H XP_027062280.1 52 SQMPKCDICQETVGYFFCLEDRALLCRKCDVAIHTAntyvstH 94 689*******9*******************654444444 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence
MKIQCNVCEV AEASVLCCAD EAALCWACDE KVHAANKLAS KHQRVPLSTS SSQMPKCDIC 60 QETVGYFFCL EDRALLCRKC DVAIHTANTY VSTHQRFLLT GVKVGLEPAE PGSSSLTGNS 120 HSGEKISETE LRPSRRPAPV SSSSQYNKVL PTQVNGVGDF VPTKTRLTGG SAAGSIPQWQ 180 FDEYLGLNDF NQSYNYIDNG SSKADSGKLG GSDCSSILRA ADEELDGDDC LGQVPEASWA 240 VPEIPSPPTA SGLYWQKAYQ NPPDTAVFVP DISGSPMQNL YNHQSHGSTF KRRKHF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	4e-99	DBB family protein