PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027061948.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

DBB

Protein Properties

Length: 332aa MW: 35949.6 Da PI: 4.6519

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027061948.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.9	7.3e-07	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ + +C+++ lC +C + H+ H++ XP_027061948.1 4 MCDFCGEQRSIVYCRSDAASLCLSCDRNVHSAnalsrrHSR 44 6*****************************65677777765 PP
2	zf-B_box	18.3	4.9e-06	46	88	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +C++++ +++ C + + lC++C +H g H+++ XP_027061948.1 46 LVCERCNLQPAFVRCIEEKISLCPNCDWLGHGGsntgstHKRQ 88 68*****************************558888888875 PP

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence
MGYMCDFCGE QRSIVYCRSD AASLCLSCDR NVHSANALSR RHSRTLVCER CNLQPAFVRC 60 IEEKISLCPN CDWLGHGGSN TGSTHKRQAV SCYSGCPSAA ELSTIWPFFL DFPLVGDSKC 120 EQIMGSMSIN EVSRDSQGAQ GKKNIQDASV AVGVTNIQNV DKSTAWTGSS MLPYDTKLQN 180 IELPAASTCA GSPKLSCFGA KGQTVCEDDS FYENFNMDEV DLSIENYDEL FGAALDNPEK 240 LFENDDIDGL FGMEISGADS NCQDAHLMEG SSMGRINGIQ PACSTAASAD SMMSLLVIIR 300 TVGPLHCFLW VSHRGVLHAL RVQILQVAGA ML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	2e-82	CO-like family protein