PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027061772.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 264aa    MW: 30088.3 Da    PI: 6.6995
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027061772.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3573.5e-18154255199
                     EEEE-..-H.HHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsd.vlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k l+  d  lk++rl++pkk+ae++  ++++++++ l+++d++g+ W+++++y  +++s++y+l+ G ++F  +++ ++gD+v+F++++  ++
  XP_027061772.1 154 FEKLLSATDaDLKLARLIIPKKCAEAFfpDISEPRGFLLKIQDTEGKDWDFNYRYwiNGGSKMYILE-GLRDFMISKRWQAGDTVTFYRVE-PGG 246
                     55666544415677***************99999*********************544445556666.********************776.999 PP

                     ..EEEEE-S CS
              B3  91 elvvkvfrk 99 
                     +l ++++++
  XP_027061772.1 247 KLIIGLRKT 255
                     999999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MGSTSTSSSS KISCFQCEET SSSFDHFRNG WRLRSGEFAQ LCPRCASIYE EGKFCEAFHS  60
NDDGWRDCES CGKLVHCGCI VSFNAYLLLD FGGVICMECS RINFALARSR CLFLEGQPDI  120
TRQTVIEPQY RPRSSEMEVQ QISRNFECVV TPLFEKLLSA TDADLKLARL IIPKKCAEAF  180
FPDISEPRGF LLKIQDTEGK DWDFNYRYWI NGGSKMYILE GLRDFMISKR WQAGDTVTFY  240
RVEPGGKLII GLRKTSSLQP PNEK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.16e-43B3 family protein