PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027061120.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 430aa    MW: 48334 Da    PI: 4.7521
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027061120.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS288.51.8e-88274232373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl..fsevsPilkf 93 
                     ++lLl+cA a++s+d +laq++++ l++ asp gdp+qRl++ f++AL +r++r +++ ++   ++s+++     + +++++l  ++++ P+++f
  XP_027061120.1  27 EKLLLHCASALESNDVTLAQQVMWVLNNVASPVGDPNQRLTSWFLKALISRVSRVCPTPMNLNgNSSPQR-----RLMTVTELagYVDLIPWHRF 116
                     689***************************************************8877776552333333.....22223333449********* PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.... 181
                     ++ + N+aI +a++g ++vHi+D++i++++QWp+L+++La+Rpegpps+Ri + +   ++    + + ee+g+rL +fA+  +vpfefnv+    
  XP_027061120.1 117 GFCASNSAIFKAIQGYNKVHILDLSITHCMQWPTLIDTLAKRPEGPPSVRISVPSWRPPVpplLNVSSEEVGQRLGNFAKFKDVPFEFNVIgeqp 211
                     ****************************************************988866668899999**************************** PP

            GRAS 182 ..............vakrledl..........eleeLrvkpgEalaVnlvlqlhrlldesvsles....erdevLklvkslsPkvvvvveqeadh 248
                                          l          ++++L+++ +Eal++n++  l +l+de+ + +s    +rd +L+ +k+l+P +++vv++++++
  XP_027061120.1 212 tvpsspcistleysS------LqydfllnqvlNPSTLKLEDDEALVINCQNWLRYLPDEQNNGASqeisCRDIFLNRIKDLNPCIITVVDEDSEL 300
                     988777655444320......12222333444777779999****************9988766656779************************* PP

            GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                     + +++  r++ +++y +  fd+le+ l++++++ri +E+  +g +i+n++a eg++r+er e+  k ++r+++ GF +vp+ e++ +++k ll +
  XP_027061120.1 301 DVSNLTSRITTCFNYLWIPFDALETFLSKDNSQRIEYEAD-IGHKIENIIAFEGTQRIERLESGTKFSQRMRNNGFFSVPFCEETISEVKFLLDE 394
                     ****************************************.****************************************************** PP

            GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     ++  g+ +++e++ lvl+Wk+++ v ++aW
  XP_027061120.1 395 HA-SGWGMKKEDDMLVLTWKGHNSVYATAW 423
                     **.8999*********************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    
MRESPQSSIL SGALKGCLGS LDGACIEKLL LHCASALESN DVTLAQQVMW VLNNVASPVG  60
DPNQRLTSWF LKALISRVSR VCPTPMNLNG NSSPQRRLMT VTELAGYVDL IPWHRFGFCA  120
SNSAIFKAIQ GYNKVHILDL SITHCMQWPT LIDTLAKRPE GPPSVRISVP SWRPPVPPLL  180
NVSSEEVGQR LGNFAKFKDV PFEFNVIGEQ PTVPSSPCIS TLEYSSLQYD FLLNQVLNPS  240
TLKLEDDEAL VINCQNWLRY LPDEQNNGAS QEISCRDIFL NRIKDLNPCI ITVVDEDSEL  300
DVSNLTSRIT TCFNYLWIPF DALETFLSKD NSQRIEYEAD IGHKIENIIA FEGTQRIERL  360
ESGTKFSQRM RNNGFFSVPF CEETISEVKF LLDEHASGWG MKKEDDMLVL TWKGHNSVYA  420
TAWVPCGFDD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-124GRAS family protein