PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027060975.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 284aa MW: 30982.4 Da PI: 9.3845

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027060975.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	104.3	1.1e-32	9	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCa+Ck++r+kC+++C+lap fp e++++f++vhk+FG+snv k+l++ +eeer++a++sl++eA a++rdP++G g ++++ ++l+ k++ XP_027060975.1 9 ACASCKHQRKKCTDKCILAPFFPVEKNREFQAVHKIFGVSNVAKILRSHnSEEERKRAADSLIWEAFAWQRDPIQGPSGEFRRVVEELKFYKTQY 103 7*******************************************99846666************************************999 PP DUF260 95 allkee 100 +++ ++ XP_027060975.1 104 QKITSQ 109 988766 PP

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence
MQRSTGLPAC ASCKHQRKKC TDKCILAPFF PVEKNREFQA VHKIFGVSNV AKILRSHNSE 60 EERKRAADSL IWEAFAWQRD PIQGPSGEFR RVVEELKFYK TQYQKITSQL PPTSQVTTSM 120 GYKPAVNAAV ASPVLVNGAW NNARNNNANI NGGISTMMNN IRGLSSNGGG LSGVHDHPNG 180 NSIIDHSSNP FAYGANSNHL VVQTMEHQNG SAAVILSQQH PNGNSNGVLQ GFEHQNGTAA 240 VMLPQQHHTI SGFNQQYYIP TGQYSSSTDV NGKTAESSPW HGNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	6e-39	LBD family protein