PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027060895.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 606aa MW: 69789.1 Da PI: 7.2542

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027060895.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.3	7.1e-25	70	158	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YAk GF +r sk +k k+++ + +r f+Cs+egk+ ++k++ + +r+etr++C a++k++ ++ +k++v +++ eHnHel+ XP_027060895.1 70 NFYQKYAKASGFGTRLSKGHKDKNSDLMLDRVFCCSREGKKPKDKRN-MIVKCPRPETRCDCSARMKISCRQGEKYRVVQFVAEHNHELS 158 6****************************************9999.99999*********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence
MENDLPTHEV QSCRKLDFED VDLQEINDNV LPLCITDGNR GNQIFLPLAI PDDLVPKLDM 60 EFDTEVAAKN FYQKYAKASG FGTRLSKGHK DKNSDLMLDR VFCCSREGKK PKDKRNMIVK 120 CPRPETRCDC SARMKISCRQ GEKYRVVQFV AEHNHELSTP SKTHLFRSHR HLTMAHEAEI 180 DMARSCGITP KQSIELMSKQ VGGRENLGFI RDDLKNYLRS KRSIPMMQGD TGGVLEYLQG 240 MQLEDPNFFY AIQVDEDGLI TNIFWADAKM RTDFAHFGDV VCFDTTYRKH KDGRPIALFV 300 GVNHHKQTTV FGAALLYDET ILTFEWLFDT FAKAMMGKIP RTILTDQDGR MATALASQWP 360 TTYHRLCIWH IYQNAATHLA DVFKDFQNFA TDFSHCIYDY ENEDDFFEGW SEMLKTYGLE 420 DNKWLKKMFD IKEKWALVYG RETFCADMTT TQRSESMNSV IKKYVSYKHG LLEFFEHFQR 480 LLDDRRYNES VADFKGNQST PAMTFPCRIL QHAASVYTAA CNKSSKYSSN KSSKRPRSAL 540 EMATKKRKYK VKEKFSSKRL QELGNNVVNS SMDSATIQGF APELPPQQGQ ELGNNDDSDQ 600 QVAKDE

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence

MENDLPTHEV QSCRKLDFED VDLQEINDNV LPLCITDGNR GNQIFLPLAI PDDLVPKLDM  60
EFDTEVAAKN FYQKYAKASG FGTRLSKGHK DKNSDLMLDR VFCCSREGKK PKDKRNMIVK  120
CPRPETRCDC SARMKISCRQ GEKYRVVQFV AEHNHELSTP SKTHLFRSHR HLTMAHEAEI  180
DMARSCGITP KQSIELMSKQ VGGRENLGFI RDDLKNYLRS KRSIPMMQGD TGGVLEYLQG  240
MQLEDPNFFY AIQVDEDGLI TNIFWADAKM RTDFAHFGDV VCFDTTYRKH KDGRPIALFV  300
GVNHHKQTTV FGAALLYDET ILTFEWLFDT FAKAMMGKIP RTILTDQDGR MATALASQWP  360
TTYHRLCIWH IYQNAATHLA DVFKDFQNFA TDFSHCIYDY ENEDDFFEGW SEMLKTYGLE  420
DNKWLKKMFD IKEKWALVYG RETFCADMTT TQRSESMNSV IKKYVSYKHG LLEFFEHFQR  480
LLDDRRYNES VADFKGNQST PAMTFPCRIL QHAASVYTAA CNKSSKYSSN KSSKRPRSAL  540
EMATKKRKYK VKEKFSSKRL QELGNNVVNS SMDSATIQGF APELPPQQGQ ELGNNDDSDQ  600
QVAKDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-108	FAR1 family protein