PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027060892.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

CO-like

Protein Properties

Length: 430aa MW: 46619.4 Da PI: 6.1707

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027060892.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.2	2.6e-06	45	75	3	33
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedCllee 33 +C+++++++++ C +++ lC+ C ++ XP_027060892.1 45 SLICDKCNSQPATVRCLEDKISLCQGCNWNG 75 569************************7555 PP
2	CCT	62.7	1.2e-21	374	417	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RY+eK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ XP_027060892.1 374 RDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAG 417 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MEPLCELCGV MRGVVYCRSD AARLCLQCDS CVHSANSLSR RHDRSLICDK CNSQPATVRC 60 LEDKISLCQG CNWNGNGCSG PGHHRQKLTF YSGCPSLAEL SRIWSSILDA PVPSNFDSSY 120 STLNMNENCM RSCSEPRGGE GSVGMVANRL NELASCVKFE PWITPPPVIP ANLDHIVPCG 180 RDQTPLFSEG SSLPKLPQGS PNLKDLGLQD GDVLCEGVDV DDVALIFDSG YEIPGNSEVH 240 SRYNSEDGAL SGLVMEKNLS VSESNGHVEN TFEASSAGQA EGIGFQSSRI VGSASLMQTM 300 NASPNCMLMN PSCNRNIGLG FPTGQVPSSI SLSLSNITGE SSAADYQDCG LSPAFLTGES 360 PWDSGLETSC PQARDKAKMR YNEKKKTRTF GKQIRYASRK ARADTRKRVK GRFVKAGEAY 420 DYDPLRTREF

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MEPLCELCGV MRGVVYCRSD AARLCLQCDS CVHSANSLSR RHDRSLICDK CNSQPATVRC  60
LEDKISLCQG CNWNGNGCSG PGHHRQKLTF YSGCPSLAEL SRIWSSILDA PVPSNFDSSY  120
STLNMNENCM RSCSEPRGGE GSVGMVANRL NELASCVKFE PWITPPPVIP ANLDHIVPCG  180
RDQTPLFSEG SSLPKLPQGS PNLKDLGLQD GDVLCEGVDV DDVALIFDSG YEIPGNSEVH  240
SRYNSEDGAL SGLVMEKNLS VSESNGHVEN TFEASSAGQA EGIGFQSSRI VGSASLMQTM  300
NASPNCMLMN PSCNRNIGLG FPTGQVPSSI SLSLSNITGE SSAADYQDCG LSPAFLTGES  360
PWDSGLETSC PQARDKAKMR YNEKKKTRTF GKQIRYASRK ARADTRKRVK GRFVKAGEAY  420
DYDPLRTREF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	1e-99	CO-like family protein