PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027060859.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 823aa MW: 95243.5 Da PI: 8.5696

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027060859.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66	1e-20	86	176	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YAk GF +rks+ k+ ++g r++vC +eg+r+e+ + ++++r+ +a trtgC a+++vk ++ + k++vt++ eHnH+la XP_027060859.1 86 EFYNLYAKLSGFGIRKSNAKRD-EDGISRFRKWVCCCEGYRNEKWFNyEDRKREAKAITRTGCGACFRVKYDTeSVKYVVTRFIMEHNHPLA 176 6**************98887.8898999********9988767889999*************9899************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 823 aa Download sequence
MGQDGVLKTH DMVQETEKGK MGMDGCGRLM SFDLNQEPEC DRDTCSEESG GSIGGHEDEE 60 ADELVGAIGV DDVMKLTFDT EEEAGEFYNL YAKLSGFGIR KSNAKRDEDG ISRFRKWVCC 120 CEGYRNEKWF NYEDRKREAK AITRTGCGAC FRVKYDTESV KYVVTRFIME HNHPLASEVS 180 VQHLRSQKKV SDAEYAQAKS LKLVGARICQ IMKHFVIKAG GYSNVGFCIK DLYNRMDEER 240 RKDIFNGDAE GALGFLAAKK DADDMFFYKY HVDNEGRLAR LFWADSKSRV DFSVFGDVLV 300 FDTTYKTNKY RKPLVVLAGV NNHLNSTIFG CALLSDERIE TYEWVLSTFV EAMKGRKPVA 360 VMTDGDSAMR RAIKNLLPDA CHRLCSWHLH RNARSNIRCE EFNNRLYDLM ARKFSTLEFE 420 DRWARLINEC GVVENEWVKK LYRRRRLWAE AYLRGNFFAG MRSTQRCEKM NTFLNEYLNE 480 KMRLYEFVRS FDLAIAWLRH TESKAVHTSE NTKPVLTTIL PELEASAAEV FTRNVFFMVR 540 KHLNRQGLLI SEGWSEDGGS RTYYYSKYGG HEISWRVVYD RSMEKLICSC IKFESKGIPC 600 AHMFRVMVVE GMNRIPEACI SKRWTKGVYS TNNGMKAFVT DEQLTQMARY GTLKSSCNSM 660 CYYASYMDDA FNDLQQMFDK HSVDLKEKWI ERGYGGDGFA MDSRVMNDRS RRTFGLLDPR 720 VSRCKGDQKH AETKKKRKCG HCRQATTNEH AHTKRIRTTQ QFMMIIWKIV WMNRWKNHLK 780 LVRGGATQAN GEDKHLHHKH AVAVEGTQVT NKEVQEKDEA QLL

Sequence ? help Back to Top

Protein Sequence Length: 823 aa Download sequence

MGQDGVLKTH DMVQETEKGK MGMDGCGRLM SFDLNQEPEC DRDTCSEESG GSIGGHEDEE  60
ADELVGAIGV DDVMKLTFDT EEEAGEFYNL YAKLSGFGIR KSNAKRDEDG ISRFRKWVCC  120
CEGYRNEKWF NYEDRKREAK AITRTGCGAC FRVKYDTESV KYVVTRFIME HNHPLASEVS  180
VQHLRSQKKV SDAEYAQAKS LKLVGARICQ IMKHFVIKAG GYSNVGFCIK DLYNRMDEER  240
RKDIFNGDAE GALGFLAAKK DADDMFFYKY HVDNEGRLAR LFWADSKSRV DFSVFGDVLV  300
FDTTYKTNKY RKPLVVLAGV NNHLNSTIFG CALLSDERIE TYEWVLSTFV EAMKGRKPVA  360
VMTDGDSAMR RAIKNLLPDA CHRLCSWHLH RNARSNIRCE EFNNRLYDLM ARKFSTLEFE  420
DRWARLINEC GVVENEWVKK LYRRRRLWAE AYLRGNFFAG MRSTQRCEKM NTFLNEYLNE  480
KMRLYEFVRS FDLAIAWLRH TESKAVHTSE NTKPVLTTIL PELEASAAEV FTRNVFFMVR  540
KHLNRQGLLI SEGWSEDGGS RTYYYSKYGG HEISWRVVYD RSMEKLICSC IKFESKGIPC  600
AHMFRVMVVE GMNRIPEACI SKRWTKGVYS TNNGMKAFVT DEQLTQMARY GTLKSSCNSM  660
CYYASYMDDA FNDLQQMFDK HSVDLKEKWI ERGYGGDGFA MDSRVMNDRS RRTFGLLDPR  720
VSRCKGDQKH AETKKKRKCG HCRQATTNEH AHTKRIRTTQ QFMMIIWKIV WMNRWKNHLK  780
LVRGGATQAN GEDKHLHHKH AVAVEGTQVT NKEVQEKDEA QLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	442	447	YRRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-97	FAR1 family protein