PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027060722.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 691aa MW: 80011.8 Da PI: 9.1099

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027060722.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.5	4.4e-18	55	145	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY ++k+vGF +r + +kk r+g +t +++vC++eg+r+++ + +++++ + t +gC a++ v+ +k +k+ +++++ +HnH+la XP_027060722.1 55 EFYLCHSKMVGFGIRERDEKKD-RKGIVTYKRWVCNREGFRNSKWLNlVNRKKEAKRLTSVGCLATIIVQWNKdIQKFTIKRFNMDHNHQLA 145 69************999887.7788************99986788888999*********99989*************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence
MEEMTAHVDE LEQLSNKSAK LGGGISWRTI VDRLDKLSSD EIQVLTFDSI EDAREFYLCH 60 SKMVGFGIRE RDEKKDRKGI VTYKRWVCNR EGFRNSKWLN LVNRKKEAKR LTSVGCLATI 120 IVQWNKDIQK FTIKRFNMDH NHQLANQEFV QFLRSHRSVN PADLEHAILM HGVGIRIPQI 180 VDLQAYQAGG HNKMGYTEKD LRNAVDQFHR NALEVGDAFQ VLAYLDGRAN DSQSRLDYQC 240 FGDVLVFDST YRTNAYRKPL VILAGVNHHY VTTIFGCALI ADETEDTYKW VLETFLEAME 300 KKAPISVVTD GDGAMRNAIK AVIPSARHRL CAWHLKRNVV THTNKGFVLD FDVAMDMICS 360 HEEFERRWHL LVEKHNLRDN QWVVDLYNKR EKWAAAFLRG HFFAGMKSTQ RSEQLNATAH 420 KYLQFKMLLY PFAHRFELFL SKVRQNEHKE KCITSQSSPV LITHLRELEG NAASIFTRKI 480 FFKIRDEISA EASLRLVSVV DQDKVKLYTF TEYLHRICSW QVELDKSERT IICSCKKLES 540 DGIPCSHAFA VMKAEDMDEI PKSCILFRWT QQAKPAEKNI YSIQLEDSAI QAARFGALCA 600 LSNQMCFYAV KTQQGYDEAR ECIINSTSRF KNLWVNDAPL VHKAKKKDNM MDESIKRSDF 660 DVRDPIVVAT KGQKAKHSTH KRKRRQCKNC K

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence

MEEMTAHVDE LEQLSNKSAK LGGGISWRTI VDRLDKLSSD EIQVLTFDSI EDAREFYLCH  60
SKMVGFGIRE RDEKKDRKGI VTYKRWVCNR EGFRNSKWLN LVNRKKEAKR LTSVGCLATI  120
IVQWNKDIQK FTIKRFNMDH NHQLANQEFV QFLRSHRSVN PADLEHAILM HGVGIRIPQI  180
VDLQAYQAGG HNKMGYTEKD LRNAVDQFHR NALEVGDAFQ VLAYLDGRAN DSQSRLDYQC  240
FGDVLVFDST YRTNAYRKPL VILAGVNHHY VTTIFGCALI ADETEDTYKW VLETFLEAME  300
KKAPISVVTD GDGAMRNAIK AVIPSARHRL CAWHLKRNVV THTNKGFVLD FDVAMDMICS  360
HEEFERRWHL LVEKHNLRDN QWVVDLYNKR EKWAAAFLRG HFFAGMKSTQ RSEQLNATAH  420
KYLQFKMLLY PFAHRFELFL SKVRQNEHKE KCITSQSSPV LITHLRELEG NAASIFTRKI  480
FFKIRDEISA EASLRLVSVV DQDKVKLYTF TEYLHRICSW QVELDKSERT IICSCKKLES  540
DGIPCSHAFA VMKAEDMDEI PKSCILFRWT QQAKPAEKNI YSIQLEDSAI QAARFGALCA  600
LSNQMCFYAV KTQQGYDEAR ECIINSTSRF KNLWVNDAPL VHKAKKKDNM MDESIKRSDF  660
DVRDPIVVAT KGQKAKHSTH KRKRRQCKNC K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	74	109	KKDRKGIVTYKRWVCNREGFRNSKWLNLVNRKKEAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-87	FAR1 family protein