PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023892678.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

TCP

Protein Properties

Length: 374aa MW: 39325.6 Da PI: 6.9575

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023892678.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.4	3.6e-36	69	185	2	123
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssasec.....e 74 a++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+ +d++ti WLl+ a+pai+++tgt ++s+++ XP_023892678.1 69 AKAKRPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHRSDGETIKWLLEHAEPAIIQATGTgtvpaiavsvngtlkipTTSPSNPDgeddiI 163 6899************************************************************5444444444444444322222111111111 PP TCP 75 aesssssasnsssgkaaksaakskksqksaasalnlakesrakararar 123 +e++s+s++n+ ++++ r ra XP_023892678.1 164 DEDNSNSNDNNVVQRKR---------------------------RRRAS 185 11111111111111222...........................22221 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MDQKEEETPN NQSPSQTPAP VDPPPPLKEE VIESEQDDLS SSPLQLNDTM SLIQVPISAS 60 SRAVVAATAK AKRPSKDRHT KVEGRGRRIR MPATCAARIF QLTRELGHRS DGETIKWLLE 120 HAEPAIIQAT GTGTVPAIAV SVNGTLKIPT TSPSNPDGED DIIDEDNSNS NDNNVVQRKR 180 RRRASQSRDF INVNERVASV SAGLAPIAPL PMWPLSVGAH NNNNSNGHGG PFFMFPNGSI 240 NHHQAQLWAI PAGATPIFNV QARPISNFVS AMQVQVPPGA GAGAGGVHVQ LGEVQGSTAG 300 SISSGGGGAT GSGSCSSMAP SSSSGTSGGT TTSNNNNSTG TTQMLRDFSM EIYERKELPF 360 LGRIGNSQTP CSKP

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MDQKEEETPN NQSPSQTPAP VDPPPPLKEE VIESEQDDLS SSPLQLNDTM SLIQVPISAS  60
SRAVVAATAK AKRPSKDRHT KVEGRGRRIR MPATCAARIF QLTRELGHRS DGETIKWLLE  120
HAEPAIIQAT GTGTVPAIAV SVNGTLKIPT TSPSNPDGED DIIDEDNSNS NDNNVVQRKR  180
RRRASQSRDF INVNERVASV SAGLAPIAPL PMWPLSVGAH NNNNSNGHGG PFFMFPNGSI  240
NHHQAQLWAI PAGATPIFNV QARPISNFVS AMQVQVPPGA GAGAGGVHVQ LGEVQGSTAG  300
SISSGGGGAT GSGSCSSMAP SSSSGTSGGT TTSNNNNSTG TTQMLRDFSM EIYERKELPF  360
LGRIGNSQTP CSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	177	183	QRKRRRR
2	178	182	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	4e-54	TCP family protein