PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023891818.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

TCP

Protein Properties

Length: 383aa MW: 40544.2 Da PI: 6.9638

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023891818.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.2	4.1e-36	81	188	2	102
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasnsssg 88 a+++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a+pai+e+tgt++ +a ++ + ++ ss + XP_023891818.1 81 AARRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEPAIIEATGTGTVPAIAVsvggtlkiPTTTRDSS------T 169 7899************************************************************888884443333323211111111......1 PP TCP 89 .....kaaksaakskksqk 102 + ++++ +k+++ XP_023891818.1 170 tatatATTTTTTAKKRKRP 188 2221111111112222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MTSYQEHEID QDDDEGGGTS DLSSGSGPHQ ENNPNTYETP ALKEEPFDSD PPSDPDQNPH 60 PVSSQPLGMV PMAMPIPVST AARRSSTKDR HTKVEGRGRR IRIPATCAAR IFQLTRELGH 120 KSDGETVRWL LEHAEPAIIE ATGTGTVPAI AVSVGGTLKI PTTTRDSSTT ATATATTTTT 180 TAKKRKRPST SEFVDVANDG VVSNLSTLAP VQPATPTVPP QGLVPVWAVG NTGMMVPANA 240 FWMIPQPGPV PGTSSTSNPN PQIWTFSPTV TPVFNVSTAR PISSFLANNS SQNQNNNVNV 300 NMNMNIASGV EIRAPSPAVC NSTVSTSMVG AKVAKKSSST MAASVTSKAH MLRDFSLEIY 360 DKQELQLLGR PGNHQTQASA SKP

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MTSYQEHEID QDDDEGGGTS DLSSGSGPHQ ENNPNTYETP ALKEEPFDSD PPSDPDQNPH  60
PVSSQPLGMV PMAMPIPVST AARRSSTKDR HTKVEGRGRR IRIPATCAAR IFQLTRELGH  120
KSDGETVRWL LEHAEPAIIE ATGTGTVPAI AVSVGGTLKI PTTTRDSSTT ATATATTTTT  180
TAKKRKRPST SEFVDVANDG VVSNLSTLAP VQPATPTVPP QGLVPVWAVG NTGMMVPANA  240
FWMIPQPGPV PGTSSTSNPN PQIWTFSPTV TPVFNVSTAR PISSFLANNS SQNQNNNVNV  300
NMNMNIASGV EIRAPSPAVC NSTVSTSMVG AKVAKKSSST MAASVTSKAH MLRDFSLEIY  360
DKQELQLLGR PGNHQTQASA SKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	1e-49	TCP family protein