PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023542829.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

NAC

Protein Properties

Length: 418aa MW: 46734.1 Da PI: 5.1392

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023542829.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.8	1.1e-32	58	197	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atk.... 79 lp+G++F+P+d+e+v +L++kv + + v+++ +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r +t XP_023542829.1 58 LPRGVKFDPSDQEIV-WHLQAKVGIGGsrlhpfI---DefiptVLEDDGICYTHPQKLP-GVKQDGSVSHFFHRAIKAYNTGTRKRRkITGddfg 147 799**********.889999987774565442...144444677778******.677888899**************54445655 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 + +W++tg++k+v+ +g ++g+kk++v+y + ++ekt+Wvmh+y+l XP_023542829.1 148 DVRWHKTGRTKPVVI-DGVQKGCKKIMVLYMSfaKGGRAEKTNWVMHQYHL 197 788********.99********6522666778*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MAGPSWLVDS NRIATKIRSA SGTSHPRSVE WKSNPSRSCP NCQHTIDNSD VAQEWPGLPR 60 GVKFDPSDQE IVWHLQAKVG IGGSRLHPFI DEFIPTVLED DGICYTHPQK LPGVKQDGSV 120 SHFFHRAIKA YNTGTRKRRK ITGDDFGDVR WHKTGRTKPV VIDGVQKGCK KIMVLYMSFA 180 KGGRAEKTNW VMHQYHLGTG EDERDGEYVI SKIFYQQQNV KHGEVTEQEI PQIVDAVKVD 240 PRTPKSATPE PPRVECRCVN VDQEQDSVVI STSALVEVPS ESDKSDKHDT IKLDGCSVEV 300 INDNENNIDE EPKWWEGESQ NILNSQQLVE ALSLCDDLLQ SQSPPRDGNA NNGASRSKSL 360 FSEYSKLGPE DLKKDLEECQ NLVLDPGNIE LDTPPEFRLS QLDFGSQESF LAWGGKAE

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MAGPSWLVDS NRIATKIRSA SGTSHPRSVE WKSNPSRSCP NCQHTIDNSD VAQEWPGLPR  60
GVKFDPSDQE IVWHLQAKVG IGGSRLHPFI DEFIPTVLED DGICYTHPQK LPGVKQDGSV  120
SHFFHRAIKA YNTGTRKRRK ITGDDFGDVR WHKTGRTKPV VIDGVQKGCK KIMVLYMSFA  180
KGGRAEKTNW VMHQYHLGTG EDERDGEYVI SKIFYQQQNV KHGEVTEQEI PQIVDAVKVD  240
PRTPKSATPE PPRVECRCVN VDQEQDSVVI STSALVEVPS ESDKSDKHDT IKLDGCSVEV  300
INDNENNIDE EPKWWEGESQ NILNSQQLVE ALSLCDDLLQ SQSPPRDGNA NNGASRSKSL  360
FSEYSKLGPE DLKKDLEECQ NLVLDPGNIE LDTPPEFRLS QLDFGSQESF LAWGGKAE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25580.1	1e-169	NAC family protein