PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023542633.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family B3
Protein Properties Length: 547aa    MW: 61777.6 Da    PI: 7.0206
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023542633.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.29.9e-1638119997
                     HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     d +++  l++p  fa++   ++   +k+++led+ g++W+v++  +++ g+  +++GW+ F +++ L+ gDf++F ++ +   +++v+++
  XP_023542633.1  38 DRFSE-VLYFPPVFAATVsRLV---NKKVVLEDSLGQQWKVTV--SNCEGSLAFREGWSAFSSEHSLEIGDFLTFNHIMD--LHFNVTIY 119
                     44444.4999999999986555...468***************..*******************************7754..44477766 PP
2B341.82e-134735422596
                     TT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  25 ehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +  +++e+ + + l+d++ r W + +     ++ +vlt+GW+ F++an++++gD ++F+++++ e+ + v+v
  XP_023542633.1 473 RARKNPEKRRLVFLRDPRKRLWPILY--HEMPNVHVLTSGWEAFCSANKIQSGDECLFHVEDELERIYEVRV 542
                     33556778889***************..*******************************8877555466665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    
MSSEVEACPE CTKRCLHLHR KTNSLSSVTS FFKVMFGDRF SEVLYFPPVF AATVSRLVNK  60
KVVLEDSLGQ QWKVTVSNCE GSLAFREGWS AFSSEHSLEI GDFLTFNHIM DLHFNVTIYT  120
KTGCEKEFAN KSNMRKRTRS NCPVLETTNE GLTYPQASCP SVGSGSNVAL SQDKCCATCY  180
RDLNLNLNQD KRPKYQSSNE RNGSLCKADI VDYSYAFINQ NKDVGLEENR SPLFDLFSME  240
MQTTNFCVNE ITTKKVAGDE LNPNRASTSL NAAIDVSRIN NARVDIKGDK SLCFEEADIK  300
RSVSDNNPCH DKTIEVPFIT SATNSDRNVE RFCDMPLKSV KDCQNIPAVC DTPSTITRHD  360
HQESNNKHTF PIDHSHGMKL EYPPISLEVK KCPHGDVKKT TKTDMNNYED FIGQISVSKV  420
KEELLEKSNQ SGSDGNDSNA DSIATRAHVS CIVAKDTLSF LELPTSLQSP CSRARKNPEK  480
RRLVFLRDPR KRLWPILYHE MPNVHVLTSG WEAFCSANKI QSGDECLFHV EDELERIYEV  540
RVRKCKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1480492KRRLVFLRDPRKR
2481493KRRLVFLRDPRKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-14B3 family protein