PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023540604.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 291aa MW: 32530.2 Da PI: 7.8833

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023540604.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.9	4e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl XP_023540604.1 14 RGPWSPEEDAKLKHYIQKHGTGgNWISLPQKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	42	2.1e-13	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++++Ed +++++++ G++ W+ Ia ++ gRt++++k++w++ XP_023540604.1 69 GDFSEDEDRIIYHLFTTIGSR-WSVIATQLP-GRTDNDIKNYWNT 111 689****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MGRTPCCDKA NVKRGPWSPE EDAKLKHYIQ KHGTGGNWIS LPQKAGLKRC GKSCRLRWLN 60 YLRPDIKHGD FSEDEDRIIY HLFTTIGSRW SVIATQLPGR TDNDIKNYWN TKLKKKLMGT 120 NNISSQNTTP HGLLSHFLQT SSTNSSSSSS PSSYSDHSNF PSFPNPNGTF STLLDTISFS 180 STLLNPTNLI STSQDQTFII NSNRAQNNYD VKSDHGLLVF GRDQPSCSSS DAEYGNGGGI 240 GVEDEKKRMS FVKQFHDHDM WMEASPLMDY GLEEIKQLIT SSSCSNVFLD G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	3e-74	MYB family protein