PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023540117.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

NAC

Protein Properties

Length: 355aa MW: 39672.4 Da PI: 8.398

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023540117.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.9	4e-53	15	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfF++r++ky++g r+nra++sgyWkatg+dk+vl++ XP_023540117.1 15 LPPGFRFHPTDEELVVHYLKKKANSAPLPV-AIIAEVDLYKFDPWELPAKASFGEQEWYFFTPRERKYPNGARPNRAATSGYWKATGTDKPVLAS 108 79**************************.88***********999999************************************9 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy g+ pkg kt+W+mheyrl XP_023540117.1 109 ggSNQKVGVKKALVFYGGKPPKGIKTSWIMHEYRL 143 877788*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MESIDSLAGP PQPNLPPGFR FHPTDEELVV HYLKKKANSA PLPVAIIAEV DLYKFDPWEL 60 PAKASFGEQE WYFFTPRERK YPNGARPNRA ATSGYWKATG TDKPVLASGG SNQKVGVKKA 120 LVFYGGKPPK GIKTSWIMHE YRLADNKPNI NKPPGYDFPN KNSLKLDDWV LCRIYKKNSS 180 HKGGMDEERE DSLAEMMMGS IPQSSMRLNH EYPKLGMNYH HTTFLQNDPN MVRGIMGANN 240 NDAAGLDINN AANSKQAPNS LFWATEEQEE DHSGISSNKR LHFDNSTSGG ASTSFTRTTH 300 SIIDSNPQNS TLLTNLPHQT PPPPSNNHHR HTLFASLPDG LFRPAYQIPD ANWYA

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MESIDSLAGP PQPNLPPGFR FHPTDEELVV HYLKKKANSA PLPVAIIAEV DLYKFDPWEL  60
PAKASFGEQE WYFFTPRERK YPNGARPNRA ATSGYWKATG TDKPVLASGG SNQKVGVKKA  120
LVFYGGKPPK GIKTSWIMHE YRLADNKPNI NKPPGYDFPN KNSLKLDDWV LCRIYKKNSS  180
HKGGMDEERE DSLAEMMMGS IPQSSMRLNH EYPKLGMNYH HTTFLQNDPN MVRGIMGANN  240
NDAAGLDINN AANSKQAPNS LFWATEEQEE DHSGISSNKR LHFDNSTSGG ASTSFTRTTH  300
SIIDSNPQNS TLLTNLPHQT PPPPSNNHHR HTLFASLPDG LFRPAYQIPD ANWYA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-105	NAC family protein