PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023537883.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 208aa MW: 23123.3 Da PI: 8.8588

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023537883.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.5	7.2e-14	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed l+ +v+ +G+ tW + + + g++R++k+c++rw++yl XP_023537883.1 14 KGPWSPDEDATLKLYVETHGTAgTWIALPTKAGLKRCGKSCRLRWLNYL 62 79****************99***********************97 PP
2	Myb_DNA-binding	54.5	2.6e-17	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd l+ ++ +q+G++ W++Ia+ ++ gRt++++k++w++ XP_023537883.1 69 GDFTEEEDNLIFNLYNQYGSR-WSSIASQLP-GRTDNDVKNHWNT 111 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence
MGRAPCCDKA NVKKGPWSPD EDATLKLYVE THGTAGTWIA LPTKAGLKRC GKSCRLRWLN 60 YLRPNIKHGD FTEEEDNLIF NLYNQYGSRW SSIASQLPGR TDNDVKNHWN TKLKKKKKLL 120 VAAGKAKLQT MSSTETSLPQ TISNSAGFDS VAQLQTPNVS PSSFSDMVPG GSGYGRDEWG 180 LMEDWGCDFS PDMVCSMFFK EKNGKLCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	119	LKKKKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	2e-64	MYB family protein