PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023536064.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ARF
Protein Properties Length: 909aa    MW: 100116 Da    PI: 5.2724
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023536064.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.31.7e-24149250199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F   +++
  XP_023536064.1 149 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFI--RDE 239
                     99*********************999*****954444.4.38************************************************..457 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++v+r+
  XP_023536064.1 240 KSQLLIGVRRA 250
                     7778****997 PP
2Auxin_resp111.67.8e-37275358183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPra++seFv++++k++k +  +++s+GmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
  XP_023536064.1 275 AAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVFgTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 358
                     79*******************************9877*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    
MSSVEDKLKT PMGLVNNTPQ TNLLDEMKLL KQMQDQTGAR KAINSELWHA CAGPLVSLPH  60
VGSLVYYFPQ GHSEQVAVST KRTATSQIPN YPNLPSQLMC QVQSVTLHAD KDSDEIYAQM  120
SLQPVNSEKD VFLVPDFGLR PSKHPNEFFC KTLTASDTST HGGFSVPRRA AEKLFPPLDY  180
TMQPPTQELV VRDLHDNTWT FRHIYRGQPK RHLLTTGWSL FVGAKRLRAG DSVLFIRDEK  240
SQLLIGVRRA NRQQTTLPSS VLSADSMHIG VLAAAAHAAA NRSPFTIFYN PRACPSEFVI  300
PLAKYRKCVF GTQLSAGMRF GMMFETEESG KRRYMGTIVG ISDLDPLRWP GSKWRNLQVE  360
WDEPGCCDKQ NRVSSWEIET PESLFIFPSL TSGLKRPLHG GFLGETDWES LVKRPMLRVP  420
ENIRGDLSYA APNLCSEPLM KMLLRPQLVS LHGATLHQDS ANNLVKIQDM KDMQPETNSK  480
MKQPIPTETA SPGNQNPDPI NPNSSPKESL PGKVHTSAAT ESEPPTGADD VSTNQSNTLP  540
PVGDCVGGKL SAKEVNMQTL VNQLSFMNQN QIPMQSWPLQ PQLESLIQHP QPIDMPQPEF  600
TLDGDGCLIN PSCLPLPGVM RSPGNLSMLA LQESSTVFPE ALNFPLPSTG QDMWDPLNNI  660
RFSSNLNCMG NANVMRAVSD ESNNQSGIYS CSNLEISNGG NTLVDPAVSS TILDDYCALK  720
DADFPHPSDC LVGNFSSSQD VQSQITSAAS LGDSQAFSRQ DFHDNSGGTS SCNVDFDEGS  780
LLHNGSWNQV VPPMRTYTKV QKAGSVGRSI DVTSFKNYDE LCSAIECMFG LEGLLNDPRG  840
SGWKLVYVDY ENDVLLIGDD PWEEFVSCVR CIRILSPSEV KQMSEEGMKL LNSAMMQGIN  900
CSMPEGGRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein