PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023536063.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ARF
Protein Properties Length: 910aa    MW: 100187 Da    PI: 5.2724
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023536063.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.31.7e-24149250199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F   +++
  XP_023536063.1 149 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFI--RDE 239
                     99*********************999*****954444.4.38************************************************..457 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++v+r+
  XP_023536063.1 240 KSQLLIGVRRA 250
                     7778****997 PP
2Auxin_resp111.67.8e-37275358183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPra++seFv++++k++k +  +++s+GmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
  XP_023536063.1 275 AAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVFgTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 358
                     79*******************************9877*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 910 aa     Download sequence    
MSSVEDKLKT PMGLVNNTPQ TNLLDEMKLL KQMQDQTGAR KAINSELWHA CAGPLVSLPH  60
VGSLVYYFPQ GHSEQVAVST KRTATSQIPN YPNLPSQLMC QVQSVTLHAD KDSDEIYAQM  120
SLQPVNSEKD VFLVPDFGLR PSKHPNEFFC KTLTASDTST HGGFSVPRRA AEKLFPPLDY  180
TMQPPTQELV VRDLHDNTWT FRHIYRGQPK RHLLTTGWSL FVGAKRLRAG DSVLFIRDEK  240
SQLLIGVRRA NRQQTTLPSS VLSADSMHIG VLAAAAHAAA NRSPFTIFYN PRACPSEFVI  300
PLAKYRKCVF GTQLSAGMRF GMMFETEESG KRRYMGTIVG ISDLDPLRWP GSKWRNLQVE  360
WDEPGCCDKQ NRVSSWEIET PESLFIFPSL TSGLKRPLHG GFLAGETDWE SLVKRPMLRV  420
PENIRGDLSY AAPNLCSEPL MKMLLRPQLV SLHGATLHQD SANNLVKIQD MKDMQPETNS  480
KMKQPIPTET ASPGNQNPDP INPNSSPKES LPGKVHTSAA TESEPPTGAD DVSTNQSNTL  540
PPVGDCVGGK LSAKEVNMQT LVNQLSFMNQ NQIPMQSWPL QPQLESLIQH PQPIDMPQPE  600
FTLDGDGCLI NPSCLPLPGV MRSPGNLSML ALQESSTVFP EALNFPLPST GQDMWDPLNN  660
IRFSSNLNCM GNANVMRAVS DESNNQSGIY SCSNLEISNG GNTLVDPAVS STILDDYCAL  720
KDADFPHPSD CLVGNFSSSQ DVQSQITSAA SLGDSQAFSR QDFHDNSGGT SSCNVDFDEG  780
SLLHNGSWNQ VVPPMRTYTK VQKAGSVGRS IDVTSFKNYD ELCSAIECMF GLEGLLNDPR  840
GSGWKLVYVD YENDVLLIGD DPWEEFVSCV RCIRILSPSE VKQMSEEGMK LLNSAMMQGI  900
NCSMPEGGRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein