PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023529416.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

NAC

Protein Properties

Length: 421aa MW: 47209.4 Da PI: 4.5998

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023529416.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.7	5.8e-33	58	197	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atk....s 80 lp+G++F+P+d+e++++ L+k g + + + v+++ +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r +t+ + XP_023529416.1 58 LPRGVKFDPSDQEIIWHLLAKVGIGGSrphpfI---DefiptVVEDDGICYTHPQKLP-GVKQDGSVSHFFHRAIKAYNTGTRKRRkITDddfgD 148 799**********888887744444576553...133343577778******.677888899**************555466557 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 +W++tg++k+v+ +g ++g+kk++v+y + ++ekt+Wvmh+y+l XP_023529416.1 149 VRWHKTGRTKPVVI-DGVQKGCKKIMVLYMSfaKGGRAEKTNWVMHQYHL 197 88********.99********6522666778*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MARPSWLVDS NRIATKIKSA SGTNNPRSVE WESNPSRSCP NCLHTIDNSD VAHEWPGLPR 60 GVKFDPSDQE IIWHLLAKVG IGGSRPHPFI DEFIPTVVED DGICYTHPQK LPGVKQDGSV 120 SHFFHRAIKA YNTGTRKRRK ITDDDFGDVR WHKTGRTKPV VIDGVQKGCK KIMVLYMSFA 180 KGGRAEKTNW VMHQYHLGTE EDERDGEYVI SKIFYQQQNV KQGEVIEQEV PEIIDAIKVD 240 PRTPKSATPE PPRVESRCVN VDPEQDSVIT STSALAEVQP EFEKSDKCDT NKPEGCSDEV 300 IDDDENQIEE EPKWWEGESQ NILDSQQLVE ALSLCDDIFQ SQSPPRDGNA NNHGASGSKS 360 CFSEYAKLGA DDLRKDIEEC QNLVLDPANI ELDTPPEFRL SQLDFGSQES FLAWGGKAAD 420 E

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MARPSWLVDS NRIATKIKSA SGTNNPRSVE WESNPSRSCP NCLHTIDNSD VAHEWPGLPR  60
GVKFDPSDQE IIWHLLAKVG IGGSRPHPFI DEFIPTVVED DGICYTHPQK LPGVKQDGSV  120
SHFFHRAIKA YNTGTRKRRK ITDDDFGDVR WHKTGRTKPV VIDGVQKGCK KIMVLYMSFA  180
KGGRAEKTNW VMHQYHLGTE EDERDGEYVI SKIFYQQQNV KQGEVIEQEV PEIIDAIKVD  240
PRTPKSATPE PPRVESRCVN VDPEQDSVIT STSALAEVQP EFEKSDKCDT NKPEGCSDEV  300
IDDDENQIEE EPKWWEGESQ NILDSQQLVE ALSLCDDIFQ SQSPPRDGNA NNHGASGSKS  360
CFSEYAKLGA DDLRKDIEEC QNLVLDPANI ELDTPPEFRL SQLDFGSQES FLAWGGKAAD  420
E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25580.1	0.0	NAC family protein