PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023519944.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family B3
Protein Properties Length: 552aa    MW: 62507.8 Da    PI: 6.3001
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023519944.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.39.1e-16411191297
                     HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     ++  + +p  fa++  +++   +k+++led+ g++W+v++  +++ g+  +++GW+ F +++ L+ gDfv+F ++   + +++v+++
  XP_023519944.1  41 SE-VVFFPPIFASTVsKLV---NKKVVLEDSLGQQWKVTV--SNCEGSLAFQEGWSAFSSEHSLEIGDFVIFNHIM--DLHFNVSIY 119
                     43.3778999998885444...568***************..*******************************775..454577776 PP
2B344.23.4e-144665481697
                     EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  16 lvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     l lp +f   +    +++e++k + l+d+s r W + +     ++  vlt+GW+ F+ an++k+gD ++F+++++ e+e++v+++
  XP_023519944.1 466 LELPMTFHLPCsrgRKNPENKKVVFLRDPSKRLWPILY--HEMPNVQVLTSGWEAFCCANRIKSGDECLFHVKDDLEREYNVSIR 548
                     5566666333344466777888999*************..9******************************99998888999998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    
MSSKVEACPE CTQRCLRFHR KTGNSSSVTS FFKVMFGDRF SEVVFFPPIF ASTVSKLVNK  60
KVVLEDSLGQ QWKVTVSNCE GSLAFQEGWS AFSSEHSLEI GDFVIFNHIM DLHFNVSIYT  120
KTGCEKVWFA EKSYTRKRIR STCPVLEITN EGLSNPQASR PSVGSGSNVT LSQDKFHVAG  180
YRNMNVYQGK RQKYQSNDEW HGPLDIVDDL YCLIDRNKDV GPEENRSPLF NLFSMEMQMV  240
NSCINENSTN KAAQDEINPN CASSSPNTII SVGPVNSVPV DIRGDMEVLP SNVSANKIND  300
KRQCFEEADI KMSVSDKDPC HDRTIEVPFI SSATNSDRNG EPFCDMPLKI IRDYQNVPAM  360
CNTVSTITRH DQGSSVKQEY PPNSLKVKKW DEKKIIKMEP LEIKTEVNNC GDFIEQILEP  420
KVIKEEFLET SNQSGREIND TTDNADPIGT PARISCVVAK DTLSFLELPM TFHLPCSRGR  480
KNPENKKVVF LRDPSKRLWP ILYHEMPNVQ VLTSGWEAFC CANRIKSGDE CLFHVKDDLE  540
REYNVSIRKC KN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.16e-13B3 family protein