PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516379.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 576aa MW: 64368.6 Da PI: 6.863

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516379.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.6	9.3e-13	400	445	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + ErrRR+++N++f+ L++llP+ +K +K ++L+ + eY++sL XP_023516379.1 400 HHVISERRRREKLNDSFQALKSLLPPG-----TKKDKGSVLTTTREYMSSL 445 58899******************97.....8**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence
MEIAFHLHES HRHSFLQTLM HSFGCTYICL WSYLPQPSKS LISLPLLSLL YFLLGFGHFV 60 LMRFGCFMDM TCSCLRFLDG LCVQEIEVQT CSSSAGSLAQ LLFEEYRQLE FSVEDGLVPG 120 LAHKHNDPCL KLEDSQLQTY ASADIQRQFY LAARIQASIF LGSINGEIEL GFSNVSQVDM 180 QMIINNLLPG DVVGPKIPLE LPQPATKLKL IPSPSLSPIP NPNPNPNPNQ LSSSTSSLRS 240 QSMDSPAECS SLLLNAIQTT PHITEPFTAD IPILPSQHQH SMDSIFAQAR NLQFPTPEAL 300 DEAMTRTILA VLSSPAGSSS SSMHKTLEGM ITPSYHLNVK ASAFKKYARV LTPTTARLNQ 360 NMSTRQSLLK RSLAFMRNLN LMRLRERMPT TSRPTSSQLH HVISERRRRE KLNDSFQALK 420 SLLPPGTKKD KGSVLTTTRE YMSSLKAQVA ELSRRNQQLE AQLLQSAKEE ETSVFPQEER 480 FRVGISQVSE STSEGQIIDL HITTRGESPL TDMVIGVLEF LKPLNNVRVV SMEGNTQLTP 540 SSSTNHLNLR LIIEENEWDE SAFREAVERV VSDLAR

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence

MEIAFHLHES HRHSFLQTLM HSFGCTYICL WSYLPQPSKS LISLPLLSLL YFLLGFGHFV  60
LMRFGCFMDM TCSCLRFLDG LCVQEIEVQT CSSSAGSLAQ LLFEEYRQLE FSVEDGLVPG  120
LAHKHNDPCL KLEDSQLQTY ASADIQRQFY LAARIQASIF LGSINGEIEL GFSNVSQVDM  180
QMIINNLLPG DVVGPKIPLE LPQPATKLKL IPSPSLSPIP NPNPNPNPNQ LSSSTSSLRS  240
QSMDSPAECS SLLLNAIQTT PHITEPFTAD IPILPSQHQH SMDSIFAQAR NLQFPTPEAL  300
DEAMTRTILA VLSSPAGSSS SSMHKTLEGM ITPSYHLNVK ASAFKKYARV LTPTTARLNQ  360
NMSTRQSLLK RSLAFMRNLN LMRLRERMPT TSRPTSSQLH HVISERRRRE KLNDSFQALK  420
SLLPPGTKKD KGSVLTTTRE YMSSLKAQVA ELSRRNQQLE AQLLQSAKEE ETSVFPQEER  480
FRVGISQVSE STSEGQIIDL HITTRGESPL TDMVIGVLEF LKPLNNVRVV SMEGNTQLTP  540
SSSTNHLNLR LIIEENEWDE SAFREAVERV VSDLAR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	405	410	ERRRRE
2	406	411	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	5e-53	bHLH family protein