PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023515260.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ARR-B
Protein Properties Length: 672aa    MW: 74313.3 Da    PI: 5.9116
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023515260.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.81.2e-28213266155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  XP_023515260.1 213 KPRVVWSVELHQQFVAAVKQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 266
                     79*******************.********************************8 PP
2Myb_DNA-binding43.38.3e-14215265148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ e+++++v avkqlG +   +k+I + m+  g+t++++ s++qky+
   XP_023515260.1 215 RVVWSVELHQQFVAAVKQLGIDkaVPKKILELMNvPGLTRENVASHLQKYR 265
                      678***********************************************7 PP
3Response_reg72.41.8e-24351431109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ +++l+++l++  y  v+ +  +e al +l+e++  +D++l D+ mp+mdG++ll++   e  +lp+i+++a + ++ + + +  G
  XP_023515260.1  35 VLVVDDDPTCLRILEKMLQNCCY-AVTKCNRAEIALSMLRENKngFDIVLSDVHMPDMDGFKLLEQVGLEM-DLPVIMMSADDGKNVVMKGVIHG 127
                     89*********************.***************999999**********************6644.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +e+l++
  XP_023515260.1 128 ACDYLIKPVRIEALRN 143
                     *************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    
MDLSHMKGSI PTPTSISDRK ATEMVSDQFP AGLRVLVVDD DPTCLRILEK MLQNCCYAVT  60
KCNRAEIALS MLRENKNGFD IVLSDVHMPD MDGFKLLEQV GLEMDLPVIM MSADDGKNVV  120
MKGVIHGACD YLIKPVRIEA LRNIWQHVVR KRKTEWKDLE QSGSVDEGDR EKNPSEGANY  180
SSSVYEGSWN SSKRRRDTEE EAEERDDTST LKKPRVVWSV ELHQQFVAAV KQLGIDKAVP  240
KKILELMNVP GLTRENVASH LQKYRLYLRR LSGVSSSHSL QCNLNNSFMN PQDPPFGPMA  300
SFNGIDLQTL SVTGHLSPQS LAALQATEFR RPATAKSSMS MALVDQNNLF SFENPKLRFV  360
DDQTPHLNNS KPINLFHGIP TKMEPKQLAI MHPSVQTQGN INMPLNIKTE HGGTQLMHHL  420
SHQQTGGQAL SNSPASHLPR ISSSFPIISG SITSRNGTAD STQGPGYNLV SPASLMMNFP  480
MNQLTELSNN FSLPSDSTVS TLTCKGVFQE EISSDLHGSD GLMSSYDVFN DLHLQKSHDW  540
DSQNVGSFAF GTSHHGNFIQ DSFDVSPSTL IHHGFPPSQT NGQNHNSSSS GKTIFPFSDA  600
TQPENAQSNA EKLPLDPGDV KPQRIPDASY QTDLLPENFG QDELLSVFLK QEQQGDNGSV  660
DFSGYQTENI CV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-165ARR-B family protein