PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023515035.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARR-B

Protein Properties

Length: 383aa MW: 43804.3 Da PI: 6.8379

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023515035.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	67.3	2.7e-21	194	243	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kp+l Wt++LH+ F++a+e L G +kA Pk+il+lm+v+gL e+v SHLQ XP_023515035.1 194 KPKLIWTQQLHKTFLQAIEAL-GVDKAHPKEILQLMNVPGLRKENVSSHLQ 243 79*****************.**************************9 PP
2	Myb_DNA-binding	25.5	3.1e-08	197	243	2	45
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwq 45 + WT+++++ +++a++ lG + ++k I + m+ g+ +++ s++q XP_023515035.1 197 LIWTQQLHKTFLQAIEALGVDkaHPKEILQLMNvPGLRKENVSSHLQ 243 56*******************************************98 PP
3	Response_reg	57.7	6.7e-20	15	123	1	108
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vd + + ++++ ++l gy e+ +a+ + +al+++ke++ ++lil+D +p+m +ell++i e+ ++lpi+++t+ ++e l +l G XP_023515035.1 15 VLVVDHDSTTLKIVSKMLGVCGY-EAVTAKCAIDALRIVKERKndIHLILTDTHLPDMGRYELLEKIMEQTSTLPIVAMTTDDNEIVKLGCLFKG 108 89*******************.9999*******887777******************99999******************* PP ESEEEESS--HHHHH CS Response_reg 94 akdflsKpfdpeelv 108 a+ +l+Kp ++++ XP_023515035.1 109 AMLCLVKPLTMKNIK 123 ******9998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MELTKKWMLY EELRVLVVDH DSTTLKIVSK MLGVCGYEAV TAKCAIDALR IVKERKNDIH 60 LILTDTHLPD MGRYELLEKI MEQTSTLPIV AMTTDDNEIV KLGCLFKGAM LCLVKPLTMK 120 NIKDLWQFLF IGGRERSISI RTSNRVQKES TDENDVDKST DKKSQKTKRK EHDEEEVSTR 180 QVEGDGSEST GPKKPKLIWT QQLHKTFLQA IEALGVDKAH PKEILQLMNV PGLRKENVSS 240 HLQFRFSLKR GQDVKKKTFE SFETAQIPNH RTKLPINVDI FVAKPQETQP QLCNNLSSTS 300 INSNLMGSCD VVSSESCFSK VITSQTCSMN STQRRSLEDQ ERRQWFECNR KEMTSTMVEE 360 QGHCMFTVDE ELDGVLDVHD LLF

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MELTKKWMLY EELRVLVVDH DSTTLKIVSK MLGVCGYEAV TAKCAIDALR IVKERKNDIH  60
LILTDTHLPD MGRYELLEKI MEQTSTLPIV AMTTDDNEIV KLGCLFKGAM LCLVKPLTMK  120
NIKDLWQFLF IGGRERSISI RTSNRVQKES TDENDVDKST DKKSQKTKRK EHDEEEVSTR  180
QVEGDGSEST GPKKPKLIWT QQLHKTFLQA IEALGVDKAH PKEILQLMNV PGLRKENVSS  240
HLQFRFSLKR GQDVKKKTFE SFETAQIPNH RTKLPINVDI FVAKPQETQP QLCNNLSSTS  300
INSNLMGSCD VVSSESCFSK VITSQTCSMN STQRRSLEDQ ERRQWFECNR KEMTSTMVEE  360
QGHCMFTVDE ELDGVLDVHD LLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	5e-42	ARR-B family protein