PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022988519.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

CO-like

Protein Properties

Length: 374aa MW: 40907.2 Da PI: 6.7284

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022988519.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.2	5.3e-06	21	61	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C+ ++ ++ +C+ ++ +lC +C ++H H+ XP_022988519.1 21 KPCDSCKTGPAAVYCRPDSAFLCLSCDAKIHCAnkfasrHE 61 57****99******************95545666666 PP
2	zf-B_box	27.3	7.3e-09	63	108	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC C +H+ H++vp+ XP_022988519.1 63 VWMCEVCEQAPAVVMCKADAAALCVACDADIHSAnplarrHERVPV 108 689*****************************66899999999986 PP
3	CCT	69.2	1.1e-23	301	343	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k+ XP_022988519.1 301 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKR 343 9****************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MGIQGDSVVK GFGGGWGVVA KPCDSCKTGP AAVYCRPDSA FLCLSCDAKI HCANKFASRH 60 ERVWMCEVCE QAPAVVMCKA DAAALCVACD ADIHSANPLA RRHERVPVEP FFDTAELMIK 120 SSSGFNFLLP TETNASGCHG AHHHEEMEVA SWLLSNPPFN SKLVDEPEIK PPGHDHMFFT 180 EMDSFIDFDY PNPVNNHSAI NDSVVPVQTK PLCTPVINTH SPENCYDIDF CRSKLNSFGH 240 QPLTLSHSVS SSSLEVGVVP EANSMSDISY RLGQSVSSGG DSGLPVSGSG NQATQLCGID 300 REARVLRYRE KRKNRKFEKT IRYASRKAYA ETRPRIKGRF AKRTVTLSEV EEMYGSAGSS 360 LFLADTQYGV VPTF

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MGIQGDSVVK GFGGGWGVVA KPCDSCKTGP AAVYCRPDSA FLCLSCDAKI HCANKFASRH  60
ERVWMCEVCE QAPAVVMCKA DAAALCVACD ADIHSANPLA RRHERVPVEP FFDTAELMIK  120
SSSGFNFLLP TETNASGCHG AHHHEEMEVA SWLLSNPPFN SKLVDEPEIK PPGHDHMFFT  180
EMDSFIDFDY PNPVNNHSAI NDSVVPVQTK PLCTPVINTH SPENCYDIDF CRSKLNSFGH  240
QPLTLSHSVS SSSLEVGVVP EANSMSDISY RLGQSVSSGG DSGLPVSGSG NQATQLCGID  300
REARVLRYRE KRKNRKFEKT IRYASRKAYA ETRPRIKGRF AKRTVTLSEV EEMYGSAGSS  360
LFLADTQYGV VPTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	8e-92	CO-like family protein