PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022150664.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

CO-like

Protein Properties

Length: 389aa MW: 43559.9 Da PI: 5.191

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022150664.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29.3	1.8e-09	13	56	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k++++fC ++ +lC+ C + H+ H++v XP_022150664.1 13 ARACDSCISKRARWFCAADDAFLCQACDASVHSAnplarrHERV 56 578*****************************657888888876 PP
2	CCT	67.3	4.2e-23	333	376	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++ XP_022150664.1 333 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRS 376 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MTTRKGVEGG KTARACDSCI SKRARWFCAA DDAFLCQACD ASVHSANPLA RRHERVRLQT 60 ASFRPSSAAS WHQGFTRKAR TPRPGKSAPA SKPFPQVPEV SPKEETEEEQ LLLLHRVPES 120 RVGLEKENSN GYLSYDMDTA EFAADVESLL GNSLDNECFD MEELGLTASI DDDSTTKEEY 180 SLNSDQVVKI EKDEMEEFAP MLDADADATR EPFELNLMDF CSNTASCGEE EKVMVEVMAV 240 VKNGEVDQME DTKIGKSKKK VSLSLDSEAV IIAWGSRGTP WTSGARPNLD VDVVNCYWPD 300 CMGTWESEYY YQPYGELGGG IGRQAAAGVE GEREARVSRY REKRRTRLFA KKIRYEVRKL 360 NAEKRPRMKG RFVKRSSCFA PPPLPPFNL

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MTTRKGVEGG KTARACDSCI SKRARWFCAA DDAFLCQACD ASVHSANPLA RRHERVRLQT  60
ASFRPSSAAS WHQGFTRKAR TPRPGKSAPA SKPFPQVPEV SPKEETEEEQ LLLLHRVPES  120
RVGLEKENSN GYLSYDMDTA EFAADVESLL GNSLDNECFD MEELGLTASI DDDSTTKEEY  180
SLNSDQVVKI EKDEMEEFAP MLDADADATR EPFELNLMDF CSNTASCGEE EKVMVEVMAV  240
VKNGEVDQME DTKIGKSKKK VSLSLDSEAV IIAWGSRGTP WTSGARPNLD VDVVNCYWPD  300
CMGTWESEYY YQPYGELGGG IGRQAAAGVE GEREARVSRY REKRRTRLFA KKIRYEVRKL  360
NAEKRPRMKG RFVKRSSCFA PPPLPPFNL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	344	360	RRTRLFAKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68520.1	1e-74	CO-like family protein