PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022138520.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

ARR-B

Protein Properties

Length: 668aa MW: 73791.9 Da PI: 5.9911

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022138520.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	90.2	1.8e-28	213	266	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl XP_022138520.1 213 KPRVVWSVELHQQFVVAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 266 79*****************.******************************8 PP
2	Myb_DNA-binding	40.8	5e-13	215	265	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e+++++v av+qlG + +k+I + m+ g+t++++ s++qky+ XP_022138520.1 215 RVVWSVELHQQFVVAVNQLGIDkaVPKKILELMNvPGLTRENVASHLQKYR 265 678***********************************************7 PP
3	Response_reg	71.4	3.8e-24	35	143	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+p+ +++l+++l+ y v+ + +e al ll+e++ +D++l D+ mp+mdG++ll++ e +lp+i+++a + ++ + + + G XP_022138520.1 35 VLVVDDDPTCLRILEKMLQTCLY-AVTKCNRAEIALSLLRENRngFDIVLSDVHMPDMDGFKLLEQVGLEM-DLPVIMMSADDGKNVVMKGVIHG 127 89******************9.*************99999*******************6644.8****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +e+l++ XP_022138520.1 128 ACDYLIKPVRIEALRN 143 ***********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence
MDLSHIKGSM ATPALIPARK ATEMVSDQFP VGLRVLVVDD DPTCLRILEK MLQTCLYAVT 60 KCNRAEIALS LLRENRNGFD IVLSDVHMPD MDGFKLLEQV GLEMDLPVIM MSADDGKNVV 120 MKGVIHGACD YLIKPVRIEA LRNIWQHVVR KRKTEWKDLE QSGSVEDGDR EQNLSEGANY 180 SSSAYEGSWN SSKRRRDAEE EPEERDDTST LKKPRVVWSV ELHQQFVVAV NQLGIDKAVP 240 KKILELMNVP GLTRENVASH LQKYRLYLRR LSGVSPSNLN NSFISPQEAT FGPMASFNGI 300 DLQTLSVVGQ LTPQSIAALQ ATGLRRSSVK SSISMALVDQ NNIFSFENPK LRFAEDQTQH 360 LNNSKPVNLF HGIPTKMEPK HLANMHHPSA QTQGNINMQL IVKSEHGGTQ LMHLTQQQAG 420 GQALNNSPAS HLPRISSTIR KPIISNGVTR GNGTADGPGY NLVSPASLMM NFPMNQTTEL 480 SNNFSLQSNS SVSTLTCNGV FQEDISSDLK GSGGLMSSYD VFNDFHLQKS HDWDSQNVSN 540 LAFGNSHHGN FIQDSFDVSP STLIHNGFPL SRTNGQNQNM SVVGKTIFSF SDATQPETAQ 600 SNIQNSLLNP VEVKTQTIPD ASYQSDLLAE NFGHDELLSV FLKQQQGDNG SVESEFDFSG 660 YQTENICV

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence

MDLSHIKGSM ATPALIPARK ATEMVSDQFP VGLRVLVVDD DPTCLRILEK MLQTCLYAVT  60
KCNRAEIALS LLRENRNGFD IVLSDVHMPD MDGFKLLEQV GLEMDLPVIM MSADDGKNVV  120
MKGVIHGACD YLIKPVRIEA LRNIWQHVVR KRKTEWKDLE QSGSVEDGDR EQNLSEGANY  180
SSSAYEGSWN SSKRRRDAEE EPEERDDTST LKKPRVVWSV ELHQQFVVAV NQLGIDKAVP  240
KKILELMNVP GLTRENVASH LQKYRLYLRR LSGVSPSNLN NSFISPQEAT FGPMASFNGI  300
DLQTLSVVGQ LTPQSIAALQ ATGLRRSSVK SSISMALVDQ NNIFSFENPK LRFAEDQTQH  360
LNNSKPVNLF HGIPTKMEPK HLANMHHPSA QTQGNINMQL IVKSEHGGTQ LMHLTQQQAG  420
GQALNNSPAS HLPRISSTIR KPIISNGVTR GNGTADGPGY NLVSPASLMM NFPMNQTTEL  480
SNNFSLQSNS SVSTLTCNGV FQEDISSDLK GSGGLMSSYD VFNDFHLQKS HDWDSQNVSN  540
LAFGNSHHGN FIQDSFDVSP STLIHNGFPL SRTNGQNQNM SVVGKTIFSF SDATQPETAQ  600
SNIQNSLLNP VEVKTQTIPD ASYQSDLLAE NFGHDELLSV FLKQQQGDNG SVESEFDFSG  660
YQTENICV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	1e-168	ARR-B family protein