PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022137178.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 469aa MW: 52234.4 Da PI: 4.8527

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022137178.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.7	3.4e-12	140	162	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C f+++tGtCk+G+ CkF+H+ XP_022137178.1 140 EDCAFYLKTGTCKFGSFCKFNHP 162 89********************9 PP
2	zf-CCCH	27.7	4.6e-09	188	208	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++++rtG Ck+G C+++H XP_022137178.1 188 ECKYYSRTGGCKFGKACRYNH 208 8******************** PP
3	zf-CCCH	42.5	1.1e-13	231	255	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG CkyG++C+F+H+ XP_022137178.1 231 DEKECPYYMRTGSCKYGANCRFNHP 255 6789********************9 PP
4	zf-CCCH	24.9	3.6e-08	355	381	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ + Ck++H++ XP_022137178.1 355 PGQPECSYFLKTGDCKFKSLCKYHHPK 381 5789*********************96 PP
5	zf-CCCH	36.4	8.8e-12	403	426	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C +++r+G+Ck+G++CkF H+ XP_022137178.1 403 QNICTYYSRYGICKFGPSCKFDHP 426 679********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MEPSEAVSTP NHSEDTTSGS QSSQLHSSVL DPAPFDAQYV ATDDPIRAEL QKLDLKDEKE 60 EVVKDYDEGG EWEGETNPGE GEGEGNATQK IDESDRDRSI KNDDDDEEVD AGDGDGSEVE 120 KRRERWGKNN HQYPVRPEAE DCAFYLKTGT CKFGSFCKFN HPVRKRNQAV SEKLKHEDDS 180 VGQASKTECK YYSRTGGCKF GKACRYNHTR PKALANPILE LNFLGLPIRP DEKECPYYMR 240 TGSCKYGANC RFNHPDPTTV AIPESPSGYN NGVPLQGAPQ PQITSWTSPR VLNETTFVPA 300 MISPSQDSEW NAYQAPIYPS DLSVLPPPTY VMNNLASDTD LYPSHQQLEE YPERPGQPEC 360 SYFLKTGDCK FKSLCKYHHP KNRNAKLTTC TLNDKGLPLR PDQNICTYYS RYGICKFGPS 420 CKFDHPILPA SSTVSEPEQQ PHYGNFSTIE GAEMAGGGSR NSTTVEQSA

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MEPSEAVSTP NHSEDTTSGS QSSQLHSSVL DPAPFDAQYV ATDDPIRAEL QKLDLKDEKE  60
EVVKDYDEGG EWEGETNPGE GEGEGNATQK IDESDRDRSI KNDDDDEEVD AGDGDGSEVE  120
KRRERWGKNN HQYPVRPEAE DCAFYLKTGT CKFGSFCKFN HPVRKRNQAV SEKLKHEDDS  180
VGQASKTECK YYSRTGGCKF GKACRYNHTR PKALANPILE LNFLGLPIRP DEKECPYYMR  240
TGSCKYGANC RFNHPDPTTV AIPESPSGYN NGVPLQGAPQ PQITSWTSPR VLNETTFVPA  300
MISPSQDSEW NAYQAPIYPS DLSVLPPPTY VMNNLASDTD LYPSHQQLEE YPERPGQPEC  360
SYFLKTGDCK FKSLCKYHHP KNRNAKLTTC TLNDKGLPLR PDQNICTYYS RYGICKFGPS  420
CKFDHPILPA SSTVSEPEQQ PHYGNFSTIE GAEMAGGGSR NSTTVEQSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-128	C3H family protein