PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022134703.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

CO-like

Protein Properties

Length: 359aa MW: 41612.8 Da PI: 7.158

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022134703.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	33.3	1e-10	18	60	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +r+C+ + +k++++fC ++ +lC++C ++ H+ H++ XP_022134703.1 18 ARVCDSCMSKRARWFCAADDAFLCQSCDVSVHSAnqlarrHDR 60 689*****************************65677777776 PP
2	CCT	67.8	3e-23	300	343	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirY++RK +Ae+RpR+KGrFvk++ XP_022134703.1 300 REARVSRYREKRRTRLFSKKIRYQVRKLNAEKRPRMKGRFVKRT 343 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MMLLRSEKQS AAAGGRAARV CDSCMSKRAR WFCAADDAFL CQSCDVSVHS ANQLARRHDR 60 IRLETAXFKS QSQLPPWPKG FTRKARTPRP TKQKASVFSL VPEIGNDDDG LLLDFNEEEN 120 PQFVHHHHQV PVFDPLIEEE NFLLTEELED FGDGFLPSEV DLAEFVADVE NLLETQQEEQ 180 ERLLRKVKDE EQEENGVKIN GFLGWNFKGE EVEEDQENKM VPMVEDEEEL LKKIKKKKKK 240 KKTNIFLRLN YDAVIMAWDA QSSPYTTGNR PEFDLDECWL GWSWAGASGG RGEWKADGER 300 EARVSRYREK RRTRLFSKKI RYQVRKLNAE KRPRMKGRFV KRTAPPLIMS STSNHINFP

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MMLLRSEKQS AAAGGRAARV CDSCMSKRAR WFCAADDAFL CQSCDVSVHS ANQLARRHDR  60
IRLETAXFKS QSQLPPWPKG FTRKARTPRP TKQKASVFSL VPEIGNDDDG LLLDFNEEEN  120
PQFVHHHHQV PVFDPLIEEE NFLLTEELED FGDGFLPSEV DLAEFVADVE NLLETQQEEQ  180
ERLLRKVKDE EQEENGVKIN GFLGWNFKGE EVEEDQENKM VPMVEDEEEL LKKIKKKKKK  240
KKTNIFLRLN YDAVIMAWDA QSSPYTTGNR PEFDLDECWL GWSWAGASGG RGEWKADGER  300
EARVSRYREK RRTRLFSKKI RYQVRKLNAE KRPRMKGRFV KRTAPPLIMS STSNHINFP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	232	240	KKIKKKKKK
2	235	241	KKKKKKK
3	236	242	KKKKKKK
4	311	327	RRTRLFSKKIRYQVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68520.1	4e-32	CO-like family protein