PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021675850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 198aa MW: 22886.3 Da PI: 8.462 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.2 | 6.6e-21 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+i+++s+ +t+skR+ g++KKA+EL vLCd++v +++fs+t kl +s XP_021675850.1 9 KKIDDTSRLRITYSKRKDGLMKKANELAVLCDTDVGLLMFSPTAKLNIFS 58 689*******************************************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence |
MGRKKLSMKK IDDTSRLRIT YSKRKDGLMK KANELAVLCD TDVGLLMFSP TAKLNIFSNK 60 RIEDIFLRYI NHPKDLQVGL TRNKEQAKLF ASQIQPWNLE NLEQAKLPDS QIQPWNLENL 120 EEAKLLNSQI QPCNLENLEV PIVMNNDNLR NEAVIGYDSE WNPSRDGNQC KENFVPVGPH 180 LSLDYLKAHL EPWKLSKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 2e-25 | MIKC_MADS family protein |