PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_021658862.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 241aa MW: 28162.2 Da PI: 8.198 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96 | 1.6e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs +gkl+eys+ XP_021658862.1 9 KRIENKINRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSYKGKLFEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 106.9 | 2.3e-35 | 83 | 173 | 10 | 100 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + + +e+++ e+++Lk+++e Lqr++Rh++Ged++sLslkeLq+LeqqLe++lk+iR++Kn+l++e+i+elqkkek++qe+n +L k+++e XP_021658862.1 83 DLNSQENWTLEYNRLKAKVELLQRNLRHYMGEDIDSLSLKELQNLEQQLETALKHIRTRKNQLMYESISELQKKEKAIQEQNSMLAKQIKE 173 445679**********************************************************************************986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 241 aa Download sequence |
MGRGRVQLKR IENKINRQVT FSKRRTGLLK KAHEISVLCD AEVALIVFSY KGKLFEYSTD 60 SCMEKILERY ERYSYAERQL TADLNSQENW TLEYNRLKAK VELLQRNLRH YMGEDIDSLS 120 LKELQNLEQQ LETALKHIRT RKNQLMYESI SELQKKEKAI QEQNSMLAKQ IKENEKAVAQ 180 QALWEQHNHG TNMSPFLLPQ PPLPCPNIGG TYQEEAPEGR RNELDLTLEP IYSCHLGCFT 240 T |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69120.1 | 1e-109 | MIKC_MADS family protein |