PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021637899.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

CO-like

Protein Properties

Length: 455aa MW: 51371.4 Da PI: 6.2611

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021637899.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.5	1.3e-08	18	59	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ + +k+++++C ++ +lC+ C ++ H+ H++v XP_021637899.1 18 ACDSCIRKQARWYCAADDAFLCQACNSSVHSAnplarrHERV 59 7*****************************657888888876 PP
2	CCT	67.9	2.7e-23	400	443	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a XP_021637899.1 400 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 443 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MISDKNVANA VGSKMTRACD SCIRKQARWY CAADDAFLCQ ACNSSVHSAN PLARRHERVR 60 LKTASLKYLD LVSKENCVPS WHRGFTRKAR TPRYGKPASR SKFERKLSST IPLVPEVGSD 120 EICHEENEEE RLLYRVPIFD PFVAQLCTSI TISSNNEAET TTAAGNDSER TVADGNGIES 180 KASFGTGGQD VESLHGFLPS DMDFAEFDAD VESLLGRGLE NDSFGMEEMG LADCKEEELQ 240 RDYYVGRGKV KLEEEEEAAE KEKEVVRDRH VDTEIEMARE PPFELSFNYD SATCGEEDEK 300 VGTGDRDLIK NNEEYEDDGE NLKKKKKRKI LLRLDYEAVI TAWASKGSPW TTGNRPDVDS 360 DECWQEYCIG ICGAKLHHHG YGDHTSGVGV QHPAMADGGR EARVSRYREK RRTRLFSKKI 420 RYEVRKLNAE KRPRMKGRFV KRASFAGPVF PLHTI

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MISDKNVANA VGSKMTRACD SCIRKQARWY CAADDAFLCQ ACNSSVHSAN PLARRHERVR  60
LKTASLKYLD LVSKENCVPS WHRGFTRKAR TPRYGKPASR SKFERKLSST IPLVPEVGSD  120
EICHEENEEE RLLYRVPIFD PFVAQLCTSI TISSNNEAET TTAAGNDSER TVADGNGIES  180
KASFGTGGQD VESLHGFLPS DMDFAEFDAD VESLLGRGLE NDSFGMEEMG LADCKEEELQ  240
RDYYVGRGKV KLEEEEEAAE KEKEVVRDRH VDTEIEMARE PPFELSFNYD SATCGEEDEK  300
VGTGDRDLIK NNEEYEDDGE NLKKKKKRKI LLRLDYEAVI TAWASKGSPW TTGNRPDVDS  360
DECWQEYCIG ICGAKLHHHG YGDHTSGVGV QHPAMADGGR EARVSRYREK RRTRLFSKKI  420
RYEVRKLNAE KRPRMKGRFV KRASFAGPVF PLHTI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	323	329	KKKKKRK
2	324	329	KKKKRK
3	411	427	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68520.1	2e-97	CO-like family protein