PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020705280.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 439aa MW: 49294.7 Da PI: 5.3274

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020705280.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.7	1.2e-09	263	308	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ErrRR+r+N +f+ L +llP+ K +K ++L k+v Y++ L XP_020705280.1 263 QHMVSERRRRERLNASFHSLWQLLPPG-----SKKDKTSVLCKTVSYVRTL 308 57889******************95.....4999**********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence
MDQGSMDVLC FEDDNNHSSS SSGSLPQKPF SGYWSSFSSM DDNYVAGICH EEVVDRVELG 60 DTDLLNSSAV EIQEQLNELD MLMDSTSQVS GDILQQCQKG NFHQSNLFHH PPLQIPNEQS 120 QLPSNTSCSF DASSSNYMMI DQLMLPASKE KQQSFSLASM EEMALTRAML SVISSSSSSS 180 SSSSSPATTS YQKAQTYQSQ ANYCPPMSSF QPYSSLKPPI KESHKNLHGQ NMIKKAHNML 240 RSVNMLKDEG KMEETPPSAY QMQHMVSERR RRERLNASFH SLWQLLPPGS KKDKTSVLCK 300 TVSYVRTLKD EIYDLEEKNR ILEENLLRNT DVKEKSKPSE RVEVQINKSS EKTTAEIQQI 360 ELVIMVRVQC DLIRVVLQVL ECIKAMKAIS LLSFDTIPNS QQMKLLATLK LTIEGSTWDE 420 RTFKEAITGA ADMALTMTA

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence

MDQGSMDVLC FEDDNNHSSS SSGSLPQKPF SGYWSSFSSM DDNYVAGICH EEVVDRVELG  60
DTDLLNSSAV EIQEQLNELD MLMDSTSQVS GDILQQCQKG NFHQSNLFHH PPLQIPNEQS  120
QLPSNTSCSF DASSSNYMMI DQLMLPASKE KQQSFSLASM EEMALTRAML SVISSSSSSS  180
SSSSSPATTS YQKAQTYQSQ ANYCPPMSSF QPYSSLKPPI KESHKNLHGQ NMIKKAHNML  240
RSVNMLKDEG KMEETPPSAY QMQHMVSERR RRERLNASFH SLWQLLPPGS KKDKTSVLCK  300
TVSYVRTLKD EIYDLEEKNR ILEENLLRNT DVKEKSKPSE RVEVQINKSS EKTTAEIQQI  360
ELVIMVRVQC DLIRVVLQVL ECIKAMKAIS LLSFDTIPNS QQMKLLATLK LTIEGSTWDE  420
RTFKEAITGA ADMALTMTA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	268	273	ERRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	8e-31	bHLH family protein