PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020702258.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HSF
Protein Properties Length: 307aa    MW: 35019.6 Da    PI: 4.8706
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020702258.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.36e-34321232102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++e++ed+e+++++sws+ +nsf+v+d+ +f++++LpkyFkhsnf+SF RQLn+YgF+kv+ ++         weF++++F  g+++ll++
  XP_020702258.1  32 FLMKIFEMVEDPETDTVVSWSSAKNSFIVWDSFKFSTTLLPKYFKHSNFSSFNRQLNTYGFRKVDPDR---------WEFANEKFLCGHRHLLKE 117
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikr+++
  XP_020702258.1 118 IKRRRQ 123
                     ***986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MDELVMVKEE AEVTDDPPQP IIGLNDLGPP PFLMKIFEMV EDPETDTVVS WSSAKNSFIV  60
WDSFKFSTTL LPKYFKHSNF SSFNRQLNTY GFRKVDPDRW EFANEKFLCG HRHLLKEIKR  120
RRQVGQTSQL QNPSQQQSEG AGRRPACVEL GQFGYDFEVD RLRRDRGTLL AEIAKLRQQH  180
QNSQAQLLAM EERIEGTERK QRNTMAFMAR ALNNPIFIQQ LIVRSQGKNK RSEALQTVEE  240
LEMASEIESI LGAERSTEAV FGPYGEEIGE MSNVMWELMN AGMVASGLES DVKAESFGEG  300
SMAPWLV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115121LKEIKRR
2161166RLRRDR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.14e-95HSF family protein