PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020696514.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

ARR-B

Protein Properties

Length: 527aa MW: 59045.6 Da PI: 5.8982

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020696514.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	86	3.7e-27	184	237	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+ Wt eLH++F++av+qL G ++A+Pk+il++m+++gL++e+v+SHLQkYR XP_020696514.1 184 KPRVTWTAELHAEFINAVNQL-GLDRAVPKKILDIMNIPGLSRENVASHLQKYRR 237 79*****************.******************************5 PP
2	Myb_DNA-binding	39.4	1.4e-12	186	236	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r WT+e++ +++av+qlG + +k+I m+ g++++++ s++qky+ XP_020696514.1 186 RVTWTAELHAEFINAVNQLGLDraVPKKILDIMNiPGLSRENVASHLQKYR 236 679***********************************************7 PP
3	Response_reg	59.9	1.3e-20	19	122	1	108
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl vdD+ + ++ l+++l + gy +v+ a+++++al+ll+e++ +Dl++ D++mp+mdG++ll+ + e ++lp+i + + + + + G XP_020696514.1 19 VLAVDDDAFSLKMLERLLLECGY-KVTIAQHAHDALKLLRENKdiYDLVISDVKMPDMDGFKLLEILGLE-MDLPVINCDF----KSVMKGIMHG 107 799******************.***********99999****************999654.489974....4589** PP ESEEEESS--HHHHH CS Response_reg 94 akdflsKpfdpeelv 108 a d+l Kp+ e++ XP_020696514.1 108 AVDYLLKPIRLEDIK 122 ********99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence
MDKCEDSMIA RGFPNELRVL AVDDDAFSLK MLERLLLECG YKVTIAQHAH DALKLLRENK 60 DIYDLVISDV KMPDMDGFKL LEILGLEMDL PVINCDFKSV MKGIMHGAVD YLLKPIRLED 120 IKVIWKHVVR KSLKEKKGSY DLWNKLDHAR TSQDVPIKDF KSHGKERDHD DSDDSDDEAT 180 AQKKPRVTWT AELHAEFINA VNQLGLDRAV PKKILDIMNI PGLSRENVAS HLQKYRRGLK 240 RNGMGLSEHF NTYAGTSVYA GSSDFMTLNS RCSAISFENF GVNGCKTMLA PSTYYPAQQF 300 PSGRATMQPT WFTHPFNGQN DLNRKYANNT KSSEVITGPQ HSINPQTDQF VTENPGLIRN 360 SLVMNAPTQA YNDLGFQSFL RRSNQLNSYT QTCQLPLPAD LNSCLSSAKQ LGYAEGSPKI 420 GTLFSNIHLE GCDSDDNLSM ELNTMLPSEQ KQQQFSSCSG LDVEMGAIND TSLVDAYSNI 480 NENLNQRSPL NFTTVSARSS SPEIIACLND VAYEDDLHAA LRQFSRS

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence

MDKCEDSMIA RGFPNELRVL AVDDDAFSLK MLERLLLECG YKVTIAQHAH DALKLLRENK  60
DIYDLVISDV KMPDMDGFKL LEILGLEMDL PVINCDFKSV MKGIMHGAVD YLLKPIRLED  120
IKVIWKHVVR KSLKEKKGSY DLWNKLDHAR TSQDVPIKDF KSHGKERDHD DSDDSDDEAT  180
AQKKPRVTWT AELHAEFINA VNQLGLDRAV PKKILDIMNI PGLSRENVAS HLQKYRRGLK  240
RNGMGLSEHF NTYAGTSVYA GSSDFMTLNS RCSAISFENF GVNGCKTMLA PSTYYPAQQF  300
PSGRATMQPT WFTHPFNGQN DLNRKYANNT KSSEVITGPQ HSINPQTDQF VTENPGLIRN  360
SLVMNAPTQA YNDLGFQSFL RRSNQLNSYT QTCQLPLPAD LNSCLSSAKQ LGYAEGSPKI  420
GTLFSNIHLE GCDSDDNLSM ELNTMLPSEQ KQQQFSSCSG LDVEMGAIND TSLVDAYSNI  480
NENLNQRSPL NFTTVSARSS SPEIIACLND VAYEDDLHAA LRQFSRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	4e-75	ARR-B family protein