PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020684082.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 225aa MW: 25265.2 Da PI: 8.4783 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.8 | 5e-22 | 19 | 65 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 krien+ rqv fskRr g++KKA ELS+LC+ae+ +++fs+ gk + XP_020684082.2 19 KRIENEEARQVCFSKRRMGLFKKATELSILCGAEIGIVVFSPAGKPF 65 79*****************************************9855 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence |
MMMVRKKRQS MGRQKIAMKR IENEEARQVC FSKRRMGLFK KATELSILCG AEIGIVVFSP 60 AGKPFSFGHP SLDYITKRFL GGGGNGNDND VEVVGPWCGM FVEGQKLLQL NQEHAGLTEK 120 LEKARRMRAE LEAEVAAQRG GSSLPCDVEV HEMGVEELES FQKRLEELQR GVANRREELE 180 ILCMDTKIVR GGVPSQLGYG GVYLGVHNGL YLTPTPIDWF YRHGF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 5e-29 | M-type_MADS family protein |