PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019199437.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NF-YC

Protein Properties

Length: 514aa MW: 57545.5 Da PI: 9.0972

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019199437.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	28.9	2.5e-09	421	500	20	99
NF-YC 20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ++P++ri +++k+++ ++s ea ++ ka e f+ + ++ a ++ + ++++v++ + fdfl d vp++ XP_019199437.1 421 TFPMSRISRMIKSENSKLKMSQEATFVINKATEKFLELFCKEAYACAFLDRKPHIGYHHLSSVVSKRQRFDFLSDYVPEK 500 79*******************************7666667888888888889*********************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence
MAKNEGVTDR TRSKKMSGNR TQSKKSPNTA SRGAARVNDE EIETVVVPSS STESENDDVS 60 DAEEHGGVEF VSEEKVSDTE GEEEEEDQEE AENGGIQFHS DEIVDDTEEE EDEVEVKSNG 120 NGNRRRKGEK LEEKRGSKNK REEEKESERV VKKAKSNAGT SQQTKEKNSK DAAKENGGVA 180 AKQAKVTKNE EKKSKQKKNG EKEKENKSEG KKEQVLKNAK NSGKTACSGN NGAKDSKQKG 240 NQKSQVEESK GKTKNNTKKE KPNGNSTHGS NKKIDEKTQK RKNKQEEDEE VRGKVAKKVK 300 VSGDKCQSSK DKKEDSKIKK KGKLEEADED EDAGEKVVAK KLKSNGQSSQ LSKDKMDDKM 360 SKQPKKVETG KQDRSHEKKV ENGAKRGGDA NRENNNIVSE KRKMIEEEVD DYDKCESVLY 420 TFPMSRISRM IKSENSKLKM SQEATFVINK ATEKFLELFC KEAYACAFLD RKPHIGYHHL 480 SSVVSKRQRF DFLSDYVPEK IKAEVALADA EKVG

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence

MAKNEGVTDR TRSKKMSGNR TQSKKSPNTA SRGAARVNDE EIETVVVPSS STESENDDVS  60
DAEEHGGVEF VSEEKVSDTE GEEEEEDQEE AENGGIQFHS DEIVDDTEEE EDEVEVKSNG  120
NGNRRRKGEK LEEKRGSKNK REEEKESERV VKKAKSNAGT SQQTKEKNSK DAAKENGGVA  180
AKQAKVTKNE EKKSKQKKNG EKEKENKSEG KKEQVLKNAK NSGKTACSGN NGAKDSKQKG  240
NQKSQVEESK GKTKNNTKKE KPNGNSTHGS NKKIDEKTQK RKNKQEEDEE VRGKVAKKVK  300
VSGDKCQSSK DKKEDSKIKK KGKLEEADED EDAGEKVVAK KLKSNGQSSQ LSKDKMDDKM  360
SKQPKKVETG KQDRSHEKKV ENGAKRGGDA NRENNNIVSE KRKMIEEEVD DYDKCESVLY  420
TFPMSRISRM IKSENSKLKM SQEATFVINK ATEKFLELFC KEAYACAFLD RKPHIGYHHL  480
SSVVSKRQRF DFLSDYVPEK IKAEVALADA EKVG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	155	RRRKGEKLEEKRGSKNKREEEKESERVVKKAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	9e-29	NF-YC family protein