PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019195586.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 553aa MW: 60375.8 Da PI: 8.0126

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019195586.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47	6.6e-15	247	306	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+ ++ a+ k++g XP_019195586.1 247 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARSYDLAAIKYWG 306 78*****************988886678446***********************98 PP
2	AP2	47.1	5.9e-15	349	400	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_019195586.1 349 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 400 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence
MKSLSNDGSG SNNGNWLGFS LSSHSSLAHS INYPNANAIY YGLEGENAGL LSSFSVMPLK 60 SDGSLCIMES FNRSHPQGLV IPTPPKLEDF FGDATMAPHH HYDDRGGGMD GQDFLNHLQD 120 YSAAMRGGGH ELQLPTMAEN QMSSATSVGL KNWVSRGFSG EHVMNENGGE STTGSIGAMG 180 YGDFQSLSLS MSPGSQSSCI TAPNHQITPT VTQSLAPETK KRGSDKVVDQ KQITHRKSFD 240 TFGQRTSQYR GVTRHRWTGR YEAHLWDNSC KKEGQSRKGR QVYLGGYDME EKAARSYDLA 300 AIKYWGPATH INFPLENYHQ EIDEMKNMTR QEYVAHLRRR SSGFSRGASI YRGVTRHHQH 360 GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFDVS RYDVERIMAS 420 STLLTGEQAR RSKNMTAAAA YNQKPGGGGV GDDFRSSCLG LEGMDNTMMM VKTTTNNHLS 480 TGNSSLVNSV ESSREGSPDK TTNTAPPVHF QSPAAANFYG TSSSVSNVNS WISSAAAAQL 540 RCPLPVFAAW TDA

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence

MKSLSNDGSG SNNGNWLGFS LSSHSSLAHS INYPNANAIY YGLEGENAGL LSSFSVMPLK  60
SDGSLCIMES FNRSHPQGLV IPTPPKLEDF FGDATMAPHH HYDDRGGGMD GQDFLNHLQD  120
YSAAMRGGGH ELQLPTMAEN QMSSATSVGL KNWVSRGFSG EHVMNENGGE STTGSIGAMG  180
YGDFQSLSLS MSPGSQSSCI TAPNHQITPT VTQSLAPETK KRGSDKVVDQ KQITHRKSFD  240
TFGQRTSQYR GVTRHRWTGR YEAHLWDNSC KKEGQSRKGR QVYLGGYDME EKAARSYDLA  300
AIKYWGPATH INFPLENYHQ EIDEMKNMTR QEYVAHLRRR SSGFSRGASI YRGVTRHHQH  360
GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFDVS RYDVERIMAS  420
STLLTGEQAR RSKNMTAAAA YNQKPGGGGV GDDFRSSCLG LEGMDNTMMM VKTTTNNHLS  480
TGNSSLVNSV ESSREGSPDK TTNTAPPVHF QSPAAANFYG TSSSVSNVNS WISSAAAAQL  540
RCPLPVFAAW TDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-119	AP2 family protein