PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019195585.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 570aa MW: 62417 Da PI: 7.8135

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019195585.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.9	6.9e-15	264	323	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+ ++ a+ k++g XP_019195585.1 264 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARSYDLAAIKYWG 323 78*****************988886678446***********************98 PP
2	AP2	47.1	6.1e-15	366	417	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_019195585.1 366 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 417 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence
MKSLSNDGSG SNNGNWLGFS LSSHSSLAHS INYPNANAIY YGLEGENAGL LSSFSVMPLK 60 SDGSLCIMES FNRSHPQGLV IPTPPKLEDF FGDATMAPHH HYDDRGGGMD GQDFLNHLQE 120 NSKHQEQQIV VAHHFQDYSA AMRGGGHELQ LPTMAENQMS SATSVGLKNW VSRGFSGEHV 180 MNENGGESTT GSIGAMGYGD FQSLSLSMSP GSQSSCITAP NHQITPTVTQ SLAPETKKRG 240 SDKVVDQKQI THRKSFDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCKKE GQSRKGRQVY 300 LGGYDMEEKA ARSYDLAAIK YWGPATHINF PLENYHQEID EMKNMTRQEY VAHLRRRSSG 360 FSRGASIYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGLNA 420 VTNFDVSRYD VERIMASSTL LTGEQARRSK NMTAAAAYNQ KPGGGGVGDD FRSSCLGLEG 480 MDNTMMMVKT TTNNHLSTGN SSLVNSVESS REGSPDKTTN TAPPVHFQSP AAANFYGTSS 540 SVSNVNSWIS SAAAAQLRCP LPVFAAWTDA

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence

MKSLSNDGSG SNNGNWLGFS LSSHSSLAHS INYPNANAIY YGLEGENAGL LSSFSVMPLK  60
SDGSLCIMES FNRSHPQGLV IPTPPKLEDF FGDATMAPHH HYDDRGGGMD GQDFLNHLQE  120
NSKHQEQQIV VAHHFQDYSA AMRGGGHELQ LPTMAENQMS SATSVGLKNW VSRGFSGEHV  180
MNENGGESTT GSIGAMGYGD FQSLSLSMSP GSQSSCITAP NHQITPTVTQ SLAPETKKRG  240
SDKVVDQKQI THRKSFDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCKKE GQSRKGRQVY  300
LGGYDMEEKA ARSYDLAAIK YWGPATHINF PLENYHQEID EMKNMTRQEY VAHLRRRSSG  360
FSRGASIYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGLNA  420
VTNFDVSRYD VERIMASSTL LTGEQARRSK NMTAAAAYNQ KPGGGGVGDD FRSSCLGLEG  480
MDNTMMMVKT TTNNHLSTGN SSLVNSVESS REGSPDKTTN TAPPVHFQSP AAANFYGTSS  540
SVSNVNSWIS SAAAAQLRCP LPVFAAWTDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-130	AP2 family protein