PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019191634.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 520aa MW: 57641.8 Da PI: 7.061

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019191634.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.8e-12	341	386	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f+ Lr+llP+ +K +Ka++L +++e ++ L XP_019191634.1 341 HHMISERKRREKLNESFQHLRSLLPPG-----TKKDKASVLSMTTEQLSAL 386 68899******************97.....8**********988776 PP

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence
MDSIFLLEEG DRIAFLFHRI MQSFGCTYIC LWSYFPHPSN YLVSVDGLFS GENSVARRLF 60 EEYRHSSPLL FHEGRIPGYA FKNNLPYMEL LFPDLERLAS NEVQKQFYRE AGIKTAIFMG 120 CGTGEIELGL SSVPQANMEM EMKNIFPEDF FRQAALPGPA MGLSSPQLQP DPNRPSSSSS 180 SLKSLSIDSP ESLLFGVAAA ATPYAAEPPL REVFSDQRGM LPVVTSPAAG GSMRHIRGAA 240 IDFPSMQCED AAITRAYLAV ISSSSPPPSS SLHPQGSFQK FTAFRRYNMA AAAAQPVGGG 300 RAIIMKKQTV LKRSFEFFRN LNLIKRQELA RTTRPTITQV HHMISERKRR EKLNESFQHL 360 RSLLPPGTKK DKASVLSMTT EQLSALKAKV EELSRKNQIL EAEVAGKGAK AEEEEEEASS 420 SFCGGGRVDV RITEAGESTS EDNRVVDLQV RVRGENGILE LVMRLLEFLK QVENVGLISV 480 EANTRSTSVH RIILRLLIQG GELNESDFLE AVRRVVGDLA

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence

MDSIFLLEEG DRIAFLFHRI MQSFGCTYIC LWSYFPHPSN YLVSVDGLFS GENSVARRLF  60
EEYRHSSPLL FHEGRIPGYA FKNNLPYMEL LFPDLERLAS NEVQKQFYRE AGIKTAIFMG  120
CGTGEIELGL SSVPQANMEM EMKNIFPEDF FRQAALPGPA MGLSSPQLQP DPNRPSSSSS  180
SLKSLSIDSP ESLLFGVAAA ATPYAAEPPL REVFSDQRGM LPVVTSPAAG GSMRHIRGAA  240
IDFPSMQCED AAITRAYLAV ISSSSPPPSS SLHPQGSFQK FTAFRRYNMA AAAAQPVGGG  300
RAIIMKKQTV LKRSFEFFRN LNLIKRQELA RTTRPTITQV HHMISERKRR EKLNESFQHL  360
RSLLPPGTKK DKASVLSMTT EQLSALKAKV EELSRKNQIL EAEVAGKGAK AEEEEEEASS  420
SFCGGGRVDV RITEAGESTS EDNRVVDLQV RVRGENGILE LVMRLLEFLK QVENVGLISV  480
EANTRSTSVH RIILRLLIQG GELNESDFLE AVRRVVGDLA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	346	351	ERKRRE
2	347	352	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	8e-63	bHLH family protein