PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019191633.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 521aa MW: 57728.9 Da PI: 7.061

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019191633.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.8e-12	342	387	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f+ Lr+llP+ +K +Ka++L +++e ++ L XP_019191633.1 342 HHMISERKRREKLNESFQHLRSLLPPG-----TKKDKASVLSMTTEQLSAL 387 68899******************97.....8**********988776 PP

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence
MDSIFLLEEG DRIAFLFHRI MQSFGCTYIC LWSYFPHPSN SYLVSVDGLF SGENSVARRL 60 FEEYRHSSPL LFHEGRIPGY AFKNNLPYME LLFPDLERLA SNEVQKQFYR EAGIKTAIFM 120 GCGTGEIELG LSSVPQANME MEMKNIFPED FFRQAALPGP AMGLSSPQLQ PDPNRPSSSS 180 SSLKSLSIDS PESLLFGVAA AATPYAAEPP LREVFSDQRG MLPVVTSPAA GGSMRHIRGA 240 AIDFPSMQCE DAAITRAYLA VISSSSPPPS SSLHPQGSFQ KFTAFRRYNM AAAAAQPVGG 300 GRAIIMKKQT VLKRSFEFFR NLNLIKRQEL ARTTRPTITQ VHHMISERKR REKLNESFQH 360 LRSLLPPGTK KDKASVLSMT TEQLSALKAK VEELSRKNQI LEAEVAGKGA KAEEEEEEAS 420 SSFCGGGRVD VRITEAGEST SEDNRVVDLQ VRVRGENGIL ELVMRLLEFL KQVENVGLIS 480 VEANTRSTSV HRIILRLLIQ GGELNESDFL EAVRRVVGDL A

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence

MDSIFLLEEG DRIAFLFHRI MQSFGCTYIC LWSYFPHPSN SYLVSVDGLF SGENSVARRL  60
FEEYRHSSPL LFHEGRIPGY AFKNNLPYME LLFPDLERLA SNEVQKQFYR EAGIKTAIFM  120
GCGTGEIELG LSSVPQANME MEMKNIFPED FFRQAALPGP AMGLSSPQLQ PDPNRPSSSS  180
SSLKSLSIDS PESLLFGVAA AATPYAAEPP LREVFSDQRG MLPVVTSPAA GGSMRHIRGA  240
AIDFPSMQCE DAAITRAYLA VISSSSPPPS SSLHPQGSFQ KFTAFRRYNM AAAAAQPVGG  300
GRAIIMKKQT VLKRSFEFFR NLNLIKRQEL ARTTRPTITQ VHHMISERKR REKLNESFQH  360
LRSLLPPGTK KDKASVLSMT TEQLSALKAK VEELSRKNQI LEAEVAGKGA KAEEEEEEAS  420
SSFCGGGRVD VRITEAGEST SEDNRVVDLQ VRVRGENGIL ELVMRLLEFL KQVENVGLIS  480
VEANTRSTSV HRIILRLLIQ GGELNESDFL EAVRRVVGDL A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	347	352	ERKRRE
2	348	353	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	2e-63	bHLH family protein