PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019190991.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SRS

Protein Properties

Length: 369aa MW: 41139.1 Da PI: 5.2269

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019190991.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	24.4	8e-08	38	72	5	39
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathv 39 + +C CGn a+ C ++ C+ CC C+ hv XP_019190991.1 38 KPKCIKCGNVARSRCPYQSCKSCCAKAQNPCHIHV 72 568*******************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MAAASSPALS NPNADSPAAV STPPPTTNAS KNLRGLNKPK CIKCGNVARS RCPYQSCKSC 60 CAKAQNPCHI HVLKGQSNLL DKALSSGSPI VDQQSTEASH PGASHRPASF RQLSTNFAQF 120 NNLQTPLRRK PLTRKDAQVI NEWRFLKLKE FRDNNIEIEN EAFDRYMQNV FLLEEAFGVN 180 SEQDGQAEDG SSSENPKPAT EEAVSMEAMV AGFKLQLRSD PVRIENTRKR MQYIVDQGLK 240 KLRKLELDEV TGDLSQPENP ETFKSPQAEW TSALGDLIDK MNKARNEEDL KACWEMKTEL 300 FNRHKEKQES SECVEASKDP CLPIPQTGIS LRGESSYSPP KWFSTTAIDD EELCQISAQF 360 DSLEDIEDL

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MAAASSPALS NPNADSPAAV STPPPTTNAS KNLRGLNKPK CIKCGNVARS RCPYQSCKSC  60
CAKAQNPCHI HVLKGQSNLL DKALSSGSPI VDQQSTEASH PGASHRPASF RQLSTNFAQF  120
NNLQTPLRRK PLTRKDAQVI NEWRFLKLKE FRDNNIEIEN EAFDRYMQNV FLLEEAFGVN  180
SEQDGQAEDG SSSENPKPAT EEAVSMEAMV AGFKLQLRSD PVRIENTRKR MQYIVDQGLK  240
KLRKLELDEV TGDLSQPENP ETFKSPQAEW TSALGDLIDK MNKARNEEDL KACWEMKTEL  300
FNRHKEKQES SECVEASKDP CLPIPQTGIS LRGESSYSPP KWFSTTAIDD EELCQISAQF  360
DSLEDIEDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	1e-89	SRS family protein