PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019188955.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 397aa MW: 43647.7 Da PI: 7.0757

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019188955.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51	3.2e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+d ++++G+g +W + +++ g++R++k+c++rw++yl XP_019188955.1 14 KGPWSPEEDAKLKDFIEKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	38.1	3.6e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd ++ + + G++ W+ Ia+ ++ gRt++++k++w++ XP_019188955.1 69 GEFSDEEDRIICTLYATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKDFIE KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FSDEEDRIIC TLYATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGM 120 MIFPSSSTGY NKRKSPLFPA TTITPSTVVP FQPPPPPPPP QSIFSLYTPT IRSPFSTLDS 180 LSSIPNFLCD NNNTISLGAP NNGAFHHQGQ NQGFLNPMQY TSPANSNPHF LMFGGGGGAE 240 PASGSSSSDG SCIKPNPPEI IKQEPDLLGN CFQAQIVSPP TANAFFDVDQ IQTQKFFVDY 300 THHVAAAETP PSDEHHFFSN GGHFATPGGS ATTTPTPPPP PVNNNNNQVQ YDLEVVTQLV 360 SSGNNGGHES NNNDGFYLFN DESKTDHERG MYYYYYN

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDAKLKDFIE KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRIIC TLYATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGM  120
MIFPSSSTGY NKRKSPLFPA TTITPSTVVP FQPPPPPPPP QSIFSLYTPT IRSPFSTLDS  180
LSSIPNFLCD NNNTISLGAP NNGAFHHQGQ NQGFLNPMQY TSPANSNPHF LMFGGGGGAE  240
PASGSSSSDG SCIKPNPPEI IKQEPDLLGN CFQAQIVSPP TANAFFDVDQ IQTQKFFVDY  300
THHVAAAETP PSDEHHFFSN GGHFATPGGS ATTTPTPPPP PVNNNNNQVQ YDLEVVTQLV  360
SSGNNGGHES NNNDGFYLFN DESKTDHERG MYYYYYN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	7e-79	MYB family protein